Sequence of DPV Okra yellow crinkle virus
Okra yellow crinkle virus complete sequence, isolate Njo5:TOC15
ACC No: HE793424
Dated: 2013-05-07 | Length: 2795 | CRC: 167958767
ID HE793424; SV 1; circular; genomic DNA; STD; VRL; 2795 BP.
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AC HE793424;
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DT 15-MAR-2013 (Rel. 116, Created)
DT 07-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Okra yellow crinkle virus complete sequence, isolate Njo5:TOC15
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KW complete genome.
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OS Okra yellow crinkle virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2795
RA Naeem Sattar M.N.;
RT ;
RL Submitted (15-MAR-2012) to the INSDC.
RL Naeem Sattar M.N., Plant Biology and Forest Genetics, Swedish University of
RL Agricultural Sciences, Box 7080, 750 07, SWEDEN.
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RN [2]
RX DOI; 10.1016/j.virusres.2013.03.010.
RX PUBMED; 23535770.
RA Leke W.N., Sattar M.N., Ngane E.B., Ngeve J.M., Kvarnheden A., Brown J.K.;
RT "Molecular characterization of begomoviruses and DNA satellites associated
RT with okra leaf curl disease in Cameroon";
RL Virus Res. 174(1-2g):116-125(2013).
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FH Key Location/Qualifiers
FH
FT source 1. .2795
FT /organism="Okra yellow crinkle virus"
FT /host="Abelmoschus esculentus"
FT /strain="Cameroon"
FT /isolate="Njo5:TOC15"
FT /mol_type="genomic DNA"
FT /country="Cameroon:Njomba, Southwestern Cameroon"
FT /collection_date="Dec-2007"
FT /db_xref="taxon:401040"
FT CDS 164. .514
FT /gene="V2"
FT /product="Pre-coat protein"
FT /protein_id="CCG85192.1"
FT /translation="MWDPLVNEFPESVHGFRCMLAIKYLQALEDTYEPNTLGSDLIRDL
FT ISVIRAKNYVEATRRYNYFHARFEGSSKAELRQPLHEPCKCPHCPRHKQTSVMDLPSNV
FT QKAQNVPDVQKP"
FT CDS 324. .1100
FT /gene="V1"
FT /product="Coat protein"
FT /protein_id="CCG85193.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRASVPTVLGTSKRRSW
FT TYRPMYRKPRMYRMYKSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTH
FT RTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNMFDN
FT EPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKESAIVRRFFKINHHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN"
FT CDS complement(1097. .1648)
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="CCG85194.1"
FT /translation="MQHSSPSASHSTQLPIKVQHRIAKKKVVRRRRIDLKCGCSYYLHI
FT NCANHDSRTGELITARQTTNGVFIWETPNPLYFKITRHLIHPFNRPFHIIDVQIRFNYN
FT LRKALGIHKCFLNFRVWTTLRPQTGRFLRVFRTQVLKYLNNLGVISINLVIRAVAHVLY
FT SVLLNTIDETENHEIKFDIY"
FT CDS complement(1557. .2636)
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="CCG85195.1"
FT /translation="MAPPKRFKINSKNYFLTFPKCSLSKEEALEQLQNLQTPTNKKFIK
FT ICKELHENGEPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNAGSVDAAMAIIREKLPKDFIFQYH
FT NLKSNLDRIFQAPPEVYVSPFSSSSFNNVPEELEEWAAENVVGAAARPWRPQSLVVEGD
FT SRTGKTMWARSLGPHNYLCGHIDLSPRVCSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTASYKEYLEEDKNAALKAWAIKNATFITLSEPL
FT YSTTDQSPAPHSQEEGSEA"
FT CDS complement(2222. .2479)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CCG85196.1"
FT /translation="MGSLISTCSSSSKASTSAQISDSSTWSPQLGQHISIRTFRELSLA
FT RTSSPTSTRTATPSNGENSRSTDEVLGEAARLLTTLQQRH"
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SQ Sequence 2795 BP; 752 A; 584 C; 628 G; 831 T; 0 other;
he793424 Length: 2795 07-MAY-2013 Type: N Check: 3407 ..
1 accggtgggc gcgaaaaaaa aaatgtggtc cccgccccac gtgaacatgt
51 cgcgcaagtg cgaaacatgt cgcgcgatgc cgtccaatca taataaagcc
101 tgaaagctat gttaatgaca ttttgtcctt aaatacttcg gccccaagta
151 ttaggtttgc aacatgtggg atccattagt caacgagttc cccgaatctg
201 tgcatgggtt tcgttgtatg cttgcaataa aatatttgca ggctttagag
251 gatacgtacg agcccaacac tttggggtct gatttaatta gagatttaat
301 atctgtgatt agagcgaaga attatgtcga agcgaccagg agatataatt
351 atttccacgc ccgtttcgaa ggttcgtcga aggctgaact tcgacagccc
401 ctacacgagc cgtgcaagtg tccccactgt cctaggcaca agcaaacgtc
451 ggtcatggac ttaccgtcca atgtacagaa agcccagaat gtaccggatg
501 tacaaaagcc ctgacgttcc tcgaggatgt gaaggtccat gtaagatcca
551 atcatttgat caacgtgact cagtaaccca tacaggtaat tcgagatgtc
601 taagtgatgt cacaagaggt aatgggctta ctcatcgtac aggtaaacgt
651 tttgttatta agtctgttta catattaggt aaggtttgga tggacgagaa
701 tgttaagaag tccaatcaca caaacacgtg tatgttctgg ttagttagag
751 atagacgtcc atatggtaat agcccacaag attttggaca ggtatttaat
801 atgtttgata atgagcccag cactgcaacg gttatgaacg acaagcgtga
851 ccgttatcag gttttaaaga ggtttcaagc aaccgtcact ggaggaccgt
901 ctggttgcaa ggagtctgct attgttaggc gttttttcaa gataaaccat
951 catgtcactt acaatcatca ggaagctgcc aaatatgaga accatacgga
1001 gaatgcttta ctactgtata tggcatgtac ccatgcgtca aatccagtat
1051 atgcgagtct taaaatacga atgtatttct atgattcagt cagcaattaa
1101 taaatatcga attttatttc atgattttct gtttcatcta ttgtatttag
1151 tagtactgaa tacagaacat gggcaactgc cctaatcact aaattaattg
1201 aaattacacc caaattattt aagtatttta gaacctgtgt tctaaatacc
1251 cttaagaaac gaccagtctg aggccgtaag gtcgtccaga ccctgaagtt
1301 gagaaaacac ttgtgaatcc ccaatgcctt ccgaaggttg tagttgaacc
1351 ggatttggac atctattatg tgaaacggcc ggttgaacgg gtgtattagg
1401 tgtcttgtga tcttgaaata taggggattt ggtgtctccc agataaaaac
1451 gccattcgtt gtctgacgag cagtgatgag ttcccctgtg cgagaatcat
1501 ggttggcgca gtttatgtgt aggtagtatg agcatccaca cttgaggtcg
1551 attcgtctac gcctcactac cttcttcttg gctatgcggt gctggacttt
1601 gatcggtagt tgagtagagt ggctcgctga gggtgatgaa tgttgcattt
1651 ttaattgccc aggctttcaa tgcagcattt ttatcttctt caagatattc
1701 tttataggaa gccgttggcc caggattgca gaggaagatt gttgggatac
1751 ctcctttaat ttgaattggt ttcccgtact tcgtgttgct ctgccagtcc
1801 ctttgggccc ccatgaattc tttaaagtgt ttgagataat gcgggtcaac
1851 atcatctatg acgttatacc atgcgtcatt tgaacagacc cttgggctaa
1901 gatctatatg accacataaa taattatgtg ggcctaagga cctagcccac
1951 attgtcttcc ctgttctact atcaccctcc accactaaac tttgaggtct
2001 ccagggccgc gcagcggcac caacgacatt ctcagctgcc cattcttcta
2051 gttcttcggg aacattatta aaagaagaag acgaaaaagg agaaacataa
2101 acctcgggcg gagcctgaaa gattctatct aagtttgact ttaaattatg
2151 atattggaaa ataaaatctt tagggagttt ttccctaata attgccatag
2201 cagcatcaac ggaacctgca ttcaatgcct ctgctgcagc gtcgttagca
2251 gtctggcagc ctcccctagc acttcgtccg tcgacctgga attctcccca
2301 ttcgagggtg tcgccgtcct tgtcgatgta ggacttgacg tccgagctag
2351 acttagctcc ctgaatgttc ggatggaaat gtgctgacct agttggggag
2401 accaggtcga agaatcgctg atttgtgcac tggtacttgc cttcgaactg
2451 gatgagcacg tggagatgag gctccccatt ttcgtgtagc tccttgcaga
2501 tctttatgaa tttcttgttt gtaggtgttt gtaggttttg aagctgttct
2551 aatgcttcct ctttggataa ggagcatttt gggaaagtaa ggaaatagtt
2601 tttagaattt attttaaatc gtttgggagg agccattctg gtcaatgtac
2651 cccgattgac tgctcctctc aaacttccca ggtaatcggt gtaacggggt
2701 acaatttata cttgtacccc aaatggcatt ctcgtaattt tagaaagtta
2751 cttactttaa ttcaaatttc ccatagcgcc caccgttcta atatt