Sequence of DPV Okra leaf curl Cameroon virus
Okra leaf curl Cameroon virus complete sequence, isolate Lik1:GR23
ACC No: HE793426
Dated: 2013-05-07 | Length: 2782 | CRC: -1250704431
ID HE793426; SV 1; circular; genomic DNA; STD; VRL; 2782 BP.
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AC HE793426;
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DT 15-MAR-2013 (Rel. 116, Created)
DT 07-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Okra leaf curl Cameroon virus complete sequence, isolate Lik1:GR23
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KW complete genome.
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OS Okra leaf curl Cameroon virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2782
RA Naeem Sattar M.N.;
RT ;
RL Submitted (15-MAR-2012) to the INSDC.
RL Naeem Sattar M.N., Plant Biology and Forest Genetics, Swedish University of
RL Agricultural Sciences, Box 7080, 750 07, SWEDEN.
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RN [2]
RX DOI; 10.1016/j.virusres.2013.03.010.
RX PUBMED; 23535770.
RA Leke W.N., Sattar M.N., Ngane E.B., Ngeve J.M., Kvarnheden A., Brown J.K.;
RT "Molecular characterization of begomoviruses and DNA satellites associated
RT with okra leaf curl disease in Cameroon";
RL Virus Res. 174(1-2g):116-125(2013).
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FH Key Location/Qualifiers
FH
FT source 1. .2782
FT /organism="Okra leaf curl Cameroon virus"
FT /host="Abelmoschus esculentus"
FT /strain="Cameroon"
FT /isolate="Lik1:GR23"
FT /mol_type="genomic DNA"
FT /country="Cameroon:Likomba, Southwestern Cameroon"
FT /collection_date="Dec-2007"
FT /db_xref="taxon:912034"
FT CDS 181. .531
FT /gene="V2"
FT /product="Pre-coat protein"
FT /protein_id="CCG85202.1"
FT /translation="MWDPLVNEFPESVHGFRCMLAIKYLQALEDTYEPNTLGSDLIRDL
FT ISVIRAKNYVEATRRYNYFHARLESSSKAELRQPLHEPCSCPHCPRHKQTSVMDLPANV
FT QKAQNVPDVQKP"
FT CDS 341. .1117
FT /gene="V1"
FT /product="Coat protein"
FT /protein_id="CCG85203.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPTVLGTSKRRSW
FT TYRPMYRKPRMYRMYKSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTH
FT RTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFWLVRDRRPYGNSPQDFGQVFNMFDN
FT EPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKEAAIVRRFFKINHHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN"
FT CDS complement(1114. .1515)
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="CCG85204.1"
FT /translation="MDSRTGELITAHQSENGVLIWTINNPLYFKTIKEFRLTHGNQTMI
FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRLGVISINNV
FT IRAVNHVLYDVLQTTVASEFTHNIQIKLY"
FT CDS complement(1259. .1663)
FT /gene="C2"
FT /product="transcriptional associated protein"
FT /protein_id="CCG85205.1"
FT /translation="MRLSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT TCRDNGFTHRGTHHCASEREWRTYLDNQQSPVFQNHQGVSSNARESNNDRDADKIQLQP
FT QEGIGDSQMFHELPGLDDLTPSDWSFLKRI"
FT CDS complement(1563. .2651)
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="CCG85206.1"
FT /translation="MAPSKRFQIYAKNYFLTFPKCSLTKEEALEQIQKISTASNKKYIK
FT ICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFH
FT NLNNNLERIFEEPPAPYVCPFLSSSFDQVPEELEEWAAENVVEAAARPCRPISIVIEGE
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWALKNATFITLSNPL
FT YSGTNQSPASGSQEESNQETQD"
FT CDS complement(2201. .2494)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CCG85207.1"
FT /translation="MANLISMCFSSSKGSSSAKIRDYSTWSPQIGQHISIQTFRELNPA
FT PTSSPTSTRMETHSNGENSRSTEDLPEEANRQPMTLTQQRLTQEVRQRLLGL"
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SQ Sequence 2782 BP; 720 A; 603 C; 617 G; 842 T; 0 other;
he793426 Length: 2782 07-MAY-2013 Type: N Check: 267 ..
1 accggtgggc gcgaaaaaaa aaatggaccc cgccccacgt gaacatgtcg
51 cgcgagtgct gaacatgtcg cgcgcgtgct gaacatgtcg cgcgatgctg
101 tccaatcaga acgcgcgctc tacgcattat aatttgaaat tttaaatata
151 tacttgctcc ctaagttgtc cgccataact atgtgggatc cgttagtgaa
201 cgagtttccc gaatctgtgc atgggtttcg ttgtatgctt gcaataaaat
251 atttgcaggc tttagaggat acgtacgagc ccaacacgtt ggggtctgat
301 ttaattagag atttaatatc tgtgattaga gcgaagaatt atgtcgaagc
351 gaccaggaga tataattatt tccacgcccg tctcgaaagt tcgtcgaagg
401 ctgaacttcg acagccctta cacgagccgt gcagctgtcc ccactgtcct
451 aggcacaagc aaacgtcggt catggactta ccggccaatg tacagaaagc
501 ccagaatgta ccggatgtac aaaagccctg atgttcctcg aggatgtgaa
551 ggtccatgta agatccaatc attcgatcaa cgtgactcag taacccatac
601 aggtaattca agatgtctaa gtgacgtcac aagaggtaat gggcttactc
651 atcgtacagg taaacgtttt gttatcaagt ctgtttacat attaggtaag
701 gtctggatgg acgagaatgt taagaagtcc aatcacacaa acacgtgtat
751 gttctggtta gttagagata gacgtccata tggtaatagt ccccaagatt
801 ttggacaggt atttaatatg tttgataatg agcccagcac tgcaacggtt
851 atgaacgaca agcgtgatcg ttatcaggtt ttaaagaggt ttcaagcaac
901 tgtcactgga ggaccgtctg gttgcaaaga ggctgctatt gttaggcgtt
951 ttttcaagat aaaccatcat gtcacttaca atcatcagga agctgcgaaa
1001 tatgagaatc atacggagaa tgctttacta ttgtatatgg cttgtactca
1051 tgcgtcaaat cctgtctatg ctagtctcaa aatacgaatg tacttctacg
1101 attctgtatc gaattaatat aattttattt gaatattgtg tgtgaattca
1151 cttgccactg ttgtttgcaa tacatcgtac aaaacatgat tgactgccct
1201 aattacattg ttaattgaaa ttactcctaa tctatacaaa tatttcataa
1251 tctgcttcct aaatacgttt aagaaaagac cagtcggagg gcgtgagatc
1301 gtccagaccc ggaagttcat gaaacatttg tgaatcccca attccttcct
1351 gaggttgtag ttgaatctta tctgcatctc tatcattgtt tgattcccgt
1401 gcgttagacg aaactccttg atggttttga aatacagggg attgttgatt
1451 gtccagataa gtacgccatt ctcgctctga tgcgcagtga tgagttcccc
1501 tgtgcgtgaa tccattgtct ctgcacgtga aggctacgta taccgtgcaa
1551 ccacaaggga tgtcaatcct gcgtctcctg attgctctct tcttggcttc
1601 ccgatgctgg actttgattg gtacctgagt acagcggatt tgagagggtg
1651 atgaaagtcg cattctttaa tgcccaggat ttgagatgcg cgttcttttc
1701 ttcgtctaaa tactctttat aggacgaatt gggacctgga ttgcagagga
1751 agattgttgg gattcctcct ttaatttgaa ctggcttccc gtattttgtg
1801 ttgctttgcc agtccttttg tgcacccatg aactccttaa agtgtttcag
1851 ataatgcggg tcaacatcat ctatgacgtt ataccatgcg tcattactga
1901 acacctttgg gctcagatca agatggccgc acaggtaatt gtgaggccca
1951 agacttctgg cccatacggt cttccctgtc ctgctttccc cttcaatcac
2001 tatactaatc ggtctacatg gccgcgcagc ggcctccacg acgttctctg
2051 ccgcccattc ttcaagttct tctggaactt ggtcgaacga agaagataaa
2101 aaaggacaaa cataaggagc tggaggctcc tcaaaaatcc tctctaaatt
2151 attatttaaa ttatgaaatt gtaaaacaaa gtctttggga gctaactccc
2201 ttataaccct aagagcctct gccttacttc ctgcgttaag cgctgctgcg
2251 taagcgtcat tggctgtctg ttggcctcct ctggcagatc ttccgtcgat
2301 ctggaattct ccccattcga gtgtgtctcc atccttgtcg atgtaggact
2351 tgacgtcgga gctggattta gctccctgaa tgtttggatg gaaatgtgct
2401 gacctatttg gggagaccag gtcgaatagt ctctgatttt ggcacttgaa
2451 cttcccttcg aactggagaa gcacatggag atgaggttgg ccatcctcgt
2501 gaagctctct gcagattttg atgtatttct tgtttgatgc tgtgcttatt
2551 ttctgtattt gctctagggc ttcctctttg gttagagaac attttgggaa
2601 agtgaggaaa taattcttgg catatatttg gaatctcttg ctaggagcca
2651 ttgacttggt caatcggtac tcagatgctt ctctccagtt tatcggtact
2701 caatatatag tgagtaccaa atggcatttt ggtaaaaatc ccaacaaatt
2751 tgaaccccca tagcgcccac cgttctaata tt