Sequence of DPV Chilli leaf curl virus
Chilli leaf curl virus complete genome, isolate T-20
ACC No: HE806433
Dated: 2013-01-07 | Length: 2760 | CRC: 804964383
ID HE806433; SV 1; circular; genomic DNA; STD; VRL; 2760 BP.
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AC HE806433;
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DT 07-JAN-2013 (Rel. 115, Created)
DT 07-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Chilli leaf curl virus complete genome, isolate T-20
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KW complete genome.
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OS Chilli leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2760
RA Akhtar S.;
RT ;
RL Submitted (08-MAY-2012) to the INSDC.
RL Akhtar S., College of Agricultural and Marine, Sciences, Sultan Qaboos
RL University, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123,
RL OMAN.
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RN [2]
RA Khan A.J., Al-Zaidi A.M., Akhtar S.;
RT "Molecular characterization and infectivity analysis of Chilli leaf curl
RT virus from Oman";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2760
FT /organism="Chilli leaf curl virus"
FT /host="Solanum lycopersicum"
FT /isolate="T-20"
FT /mol_type="genomic DNA"
FT /country="Oman:Salalah"
FT /isolation_source="leaf"
FT /collected_by="Abdul Rehman Mohammed Obeid Al-Matroushi"
FT /collection_date="2011"
FT /db_xref="taxon:172278"
FT CDS 151. .516
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="CCH63277.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES
FT EAQDVQDVQKPRCSEGM"
FT CDS 311. .1081
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="CCH63278.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1078. .1482)
FT /gene="C3"
FT /gene_synonym="REn"
FT /product="replication enhancement protein"
FT /protein_id="CCH63279.1"
FT /translation="MDSRTGEPITAAHAGRCVFIWEITNPLYFKITEHHNRPFLRSQDI
FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN
FT VNRAVDHVLWNVLDHIVYVNQSYSIKYNLY"
FT CDS complement(1223. .1627)
FT /gene="C2"
FT /gene_synonym="TrAP"
FT /product="transcriptional activator protein"
FT /protein_id="CCH63280.1"
FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSCGALRFYLGDNKSPVFQDHRAPQQAIPEKPRHHHSADTVQSQP
FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI"
FT CDS complement(1530. .2615)
FT /gene="C1"
FT /gene_synonym="Rep"
FT /product="replication initiation protein"
FT /protein_id="CCH63281.1"
FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR
FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV
FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPLRPMSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL
FT YSGSNQSAAQAGQEGDQASSR"
FT CDS complement(2165. .2458)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CCH63282.1"
FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL
FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF"
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SQ Sequence 2760 BP; 763 A; 555 C; 636 G; 806 T; 0 other;
he806433 Length: 2760 07-JAN-2013 Type: N Check: 1086 ..
1 accggatggc cgcgtttttt ttttaccgtg gaccccgcga tgcacgtgct
51 gacaaataca tgtggaccaa ttaaaaacgt ccctcaaagc ttaattgttt
101 cgtggtcccc tctataaact ttgggctcca agtagtgggt ttttatcaca
151 atgtgggatc ctttactaaa tgagtttccc gaaagtgttc atgggtttag
201 gtgtatgtta gcagtgaaat atctgcaatt agtagaaaat tcatattcgc
251 cagacacatt agggtacgat ttaatcaggg atttaatttc agttattagg
301 gctagaaatt atgtcgaagc gaccagcaga tataatcatt tccacgcccg
351 cctcgaaggt acgccgtcgt ctcaacttcg acagcccata tgccagccgt
401 gctgctgccc ccattgtccg cgtcacaaag gcaaaggcat gggccaacag
451 gcccatgaat cggaagccca ggatgtacag gatgtacaga agcccagatg
501 ttccgagggg atgtgaaggc ccatgtaagg tccagtcttt tgagtctaga
551 cacgatgtag ttcatatagg gaaggttatg tgtattagtg atgttacccg
601 tggtaccggg ttaacccata gagtaggtaa gcgtttctgt gttaagtctg
651 tttatgtctt agggaagata tggatggatg agaatatcaa gacaaagaat
701 cacacgaata gtgtgatgtt cttccttgtc cgtgatcgtc gacctacagg
751 tgcaccacaa gattttggag atgtgtttaa tatgttcgac aacgaaccta
801 gcactgccac tgtgaagaat atgcatagag atcgttatca ggtcttgagg
851 aaatggcacg caacggttac tggtggacag tacgcgtcga aggaacaggc
901 attagttaag aagttcgtta gggttaacaa ttatgttgtg tataaccagc
951 aggaagctgg aaaatatgag aatcatagtg agaatgctct gatgttgtat
1001 atggcgtgta ctcacgcctc taaccctgtg tatgctacat tgaagatacg
1051 tatctatttc tatgattcag tatcgaatta ataaagatta tattttattg
1101 aatatgattg gtttacatat acaatgtgat ctaatacatt ccataataca
1151 tgatcaactg ctctatttac attgttaata ctaattacag caaaattatt
1201 aagcactttc aatacttggg ttttaaatac ccttaagaaa tgaccagtct
1251 gaggctgtaa ggtcgtccag attcggtagg ttagaaaaca tttgtgcatc
1301 cccaacgctt tcctcaggtt gtgattgaac cgtatctgca ctgtgatgat
1351 gtcttggctt ctcaggaatg gcctgttgtg gtgctctgtg atcttgaaat
1401 acaggggatt tgttatctcc cagataaaaa cgcaacgccc cgcatgagct
1451 gcagtgatgg gttcccctgt gcgtgaatcc atagccgtgg caacgtaatg
1501 cgatgaaata tgaacagccg caatcgaggt caacgcgacg acgcctggtc
1551 cccttcttgg ccagcctgtg ctgcactttg attggaacct gagtagagtg
1601 ggcctgtgag ggtgatgaag gtcgcattct ttaaagccca atgtttgagt
1651 gcggaattct tttcttcatc caagaactct ttatagctgg aattgggtcc
1701 tggattgcag aggaagatag cgggaattcc acctttaatt tgaactggct
1751 ttccgtattt tgtatttgat tgccagtccc tttgggcccc catgaattct
1801 ttaaagtgtt ttagataatg cgggtcgacg tcatcaatga cgttatacga
1851 ggcatcattg ctgtacactt tagggctaag gtctaagtga ccacatagat
1901 agttatgtgg acccaacgac ctagcccaca tggtcttccc ggttcgacta
1951 tcaccctcaa tcacaatact catgggtctt aaaggccgcg cagcggcacc
2001 caccacgttc acagaagccc attcctcaag ttcatcagga acttgatcaa
2051 aagaagaaga aagaaaagga gaaacataaa catccggtgg aggcgtaaaa
2101 atcctatcta aattagcatt taaattatga aattgtaaaa cataatcttt
2151 gggagctttc tcccttaaaa tattgagggc cgcagccttg gaccctgaat
2201 tgattgcctc ggcatatgcg tcgttggcag attggcaacc tcctctagct
2251 gatctgccat cgatctggaa aactccagag tcaatgaagt ctccgtcttt
2301 ctccacatag gctttgacat ctgaagagct cttagctctc tgaatgttcg
2351 gatggaaatg tgctgaccgg gttggggaaa tgaggtcgaa gaatctgttg
2401 tttgtgcatt gatatttgcc ttcgaattgg acgagcacgt gtagatgagg
2451 ttccccattc tcgtgcaatt ctctgcaaac cctaataaat aatttattta
2501 ctggggtttc taagttttgt aattgggaaa gggcctcttc tttagtaaga
2551 gagcagttag gatatgttag gaaataattt ttagcattta tattgaatct
2601 ccccgctcta ggcatattgg tggacactca aacttactat gcaatcggtg
2651 gaatggggga caaattatat gtgtccacca atggcaaatt ggtaattgtt
2701 gttacattta aaaaatttaa aattcaaatt ccgacaaaag cggccatccg
2751 cattaatatt