Sequence of DPV Chilli leaf curl virus
Chilli leaf curl virus complete genome, isolate T-24
ACC No: HE806435
Dated: 2013-02-21 | Length: 2759 | CRC: 1775197339
ID HE806435; SV 1; circular; genomic DNA; STD; VRL; 2759 BP.
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AC HE806435;
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DT 07-JAN-2013 (Rel. 115, Created)
DT 21-FEB-2013 (Rel. 115, Last updated, Version 2)
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DE Chilli leaf curl virus complete genome, isolate T-24
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KW complete genome.
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OS Chilli leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2759
RA Akhtar S.;
RT ;
RL Submitted (08-MAY-2012) to the INSDC.
RL Akhtar S., College of Agricultural and Marine, Sciences, Sultan Qaboos
RL University, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123,
RL OMAN.
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RN [2]
RA Khan A.J., Al-Zaidi A.M., Akhtar S.;
RT "Molecular characterization and infectivity analysis of Chilli leaf curl
RT virus from Oman";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2759
FT /organism="Chilli leaf curl virus"
FT /host="Solanum lycopersicum"
FT /isolate="T-24"
FT /mol_type="genomic DNA"
FT /country="Oman:Thumrait"
FT /isolation_source="leaf"
FT /collected_by="Abdul Rehman Mohammed Obeid Al-Matroushi"
FT /collection_date="2011"
FT /db_xref="taxon:172278"
FT CDS 150. .515
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="CCH63289.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES
FT EAQDVQDVQKPRCSEGM"
FT CDS 310. .1080
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="CCH63290.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1077. .1481)
FT /gene="C3"
FT /gene_synonym="REn"
FT /product="replication enhancement protein"
FT /protein_id="CCH63291.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSQDI
FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN
FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY"
FT CDS complement(1222. .1626)
FT /gene="C2"
FT /gene_synonym="TrAP"
FT /product="transcriptional activator protein"
FT /protein_id="CCH63292.1"
FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQP
FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI"
FT CDS complement(1529. .2614)
FT /gene="C1"
FT /gene_synonym="Rep"
FT /product="replication initiation protein"
FT /protein_id="CCH63293.1"
FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR
FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV
FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPLRPMSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL
FT YSGSNQSAAQAGQEGDQASSR"
FT CDS complement(2164. .2457)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CCH63294.1"
FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL
FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF"
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SQ Sequence 2759 BP; 761 A; 554 C; 635 G; 809 T; 0 other;
he806435 Length: 2759 21-FEB-2013 Type: N Check: 9912 ..
1 accggatggc cgcgattttt ttttaccgtg gaccccgcga tacacgtgct
51 gacaaagaca tgtggaccaa ttaaaaacgt ccctcaaagc ttaattgttt
101 cgtggtcccc tctataaact tgggctccaa gtagtgggtt tttatcacaa
151 tgtgggatcc tttactaaat gagtttcccg aaagtgttca tgggtttagg
201 tgtatgttag cagtgaaata tctgcaatta gtagaaaatt catattcgcc
251 agacacatta gggtacgatt taatcaggga tttaatttca gttattaggg
301 ctagaaatta tgtcgaagcg accagcagat ataatcattt ccacgcccgc
351 ctcgaaggta cgccgtcgtc tcaacttcga cagcccatat gccagccgtg
401 ctgctgcccc cattgtccgc gtcacaaagg caaaggcatg ggccaacagg
451 cccatgaatc ggaagcccag gatgtacagg atgtacagaa gcccagatgt
501 tccgagggga tgtgaaggcc catgtaaggt ccagtctttt gagtctagac
551 acgatgtagt tcatataggg aaggttatgt gtattagtga tgttacccgt
601 ggtaccgggt taacccatag agtaggtaag cgtttctgtg ttaagtctgt
651 ttatgtctta gggaagatat ggatggatga gaatatcaag actaagaatc
701 acacgaatag tgtgatgttc ttccttgtac gtgatcgtcg acctacaggt
751 gcaccacaag attttggaga tgtgtttaat atgttcgaca acgaacctag
801 cactgccact gtgaagaata tgcatagaga tcgttatcag gtcttgagga
851 aatggcacgc gacggttact ggtggacagt acgcgtcgaa ggaacaggca
901 ttagttaaga agttcgttag ggttaacaat tatgttgtgt ataaccagca
951 ggaagctgga aaatatgaga atcatagtga gaatgctctg atgttgtata
1001 tggcgtgtac tcacgcctct aaccctgtgt atgctacatt gaagatacgt
1051 atctatttct atgattcagt atcgaattaa taaagattat attttattga
1101 atatgattgg tttacatata caacgtgatc taatacattc cataatacat
1151 gatcaactgc tctatttaca ttgttaatac taattacagc aaaattatta
1201 agcactttca atacttgggt tttaaatacc cttaagaaat gaccagtctg
1251 aggctgtaag gtcgtccaga ttcggtaggt tagaaaacat ttgtgcatcc
1301 ccaacgcttt cctcaggttg tgattgaacc gtatctgcac tgtgatgatg
1351 tcttggcttc tcaggaatgg cctgttgtgg tgctctgtta tcttgaaata
1401 caggggattt gttatctccc agataaacac gccattctct gcttgagctg
1451 cagtgatggg ttcccctgtg cgtgaatcca tagccgtggc aacgtaatgc
1501 gatgaaatat gaacagccgc aatcgaggtc aacgcgacga cgcctggtcc
1551 ccttcttggc cagcctgtgc tgcactttga ttggaacctg agtagagtgg
1601 gcctgtgagg gtgatgaagg tcgcattctt taaagcccaa tgtttgagtg
1651 cggaattctt ttcttcatcc aagaactctt tatagctgga attgggtcct
1701 ggattgcaga ggaagatagc gggaattcca cctttaattt gaattggctt
1751 tccgtatttt gtatttgatt gccagtccct ttgggccccc atgaattctt
1801 taaagtgttt tagataatgc gggtcgacgt catcaatgac gttatacgag
1851 gcatcattgc tgtacacttt agggctaagg tctaagtgac cacataggta
1901 gttatgtgga cccaacgacc tagcccacat ggtcttcccg gttcgactat
1951 caccctcaat cacaatactc atgggtctca aaggccgcgc agcggcaccc
2001 accacgttca cagaagccca ttcctcaagt tcatcaggaa cttgatcaaa
2051 agaagaagaa agaaaaggag aaacataaac atccggtgga ggcgtaaaaa
2101 tcctatctaa attagcattt aaattatgaa attgtaaaac ataatctttg
2151 ggagctttct cccttaaaat attgagggcc gcagccttgg accctgaatt
2201 gattgcctcg gcatatgcgt cgttggcaga ttggcaacct cctctagctg
2251 atctgccatc gatctggaaa actccagagt caatgaagtc tccgtctttc
2301 tccacatagg ctttgacatc tgaagagctc ttagctctct gaatgttcgg
2351 atggaaatgt gctgaccggg ttggggaaat gaggtcgaag aatctgttgt
2401 ttgtgcattg atatttgcct tcgaattgga cgagcacgtg tagatgaggt
2451 tccccattct cgtgcaattc tctgcaaacc ctaataaata atttatttac
2501 tggggtttct aagttttgta attgggaaag ggcctcttct ttagtaagag
2551 agcagttagg atatgttagg aaataatttt tagcatttat attgaatctc
2601 cccgctctag gcatattggt ggacactcaa acttactatg caatcggtgg
2651 aatgggggac aatttatatg tgtccaccaa tggcaaattg gtaattgttg
2701 ttacattaaa aaaatttaaa attcaaattc caacaaaagc ggccatccgc
2751 attaatatt