Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus Uganda segment DNA-A, isolate Chad-Ndokono-TD1-2008 complete sequence
ACC No: HE814064
Dated: 2012-07-08 | Length: 2798 | CRC: 1990765784
ID HE814064; SV 1; circular; genomic DNA; STD; VRL; 2798 BP.
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AC HE814064;
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DT 08-JUL-2012 (Rel. 113, Created)
DT 08-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE East African cassava mosaic virus Uganda segment DNA-A, isolate
DE Chad-Ndokono-TD1-2008 complete sequence
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KW complete viral segment.
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OS East African cassava mosaic virus Uganda
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2798
RA Lett J.M.;
RT ;
RL Submitted (07-MAY-2012) to the INSDC.
RL Lett J.M., Pole de Protection des Plantes, CIRAD-BIOS-UMR PVBMT, 7 Chemin
RL de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE.
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RN [2]
RA Zinga I., Harimalala M., De Bruyn A., Hoareau M., Mandakombo N.,
RA Semballa S., Reynaud B., Lefeuvre P., Lett J.M.;
RT "East African cassava mosaic virus-Uganda (EACMV-UG) and African cassava
RT mosaic virus (ACMV) reported for the first time in Central African Republic
RT and Chad";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2798
FT /organism="East African cassava mosaic virus Uganda"
FT /segment="DNA-A"
FT /strain="Uganda"
FT /isolate="Chad-Ndokono-TD1-2008"
FT /mol_type="genomic DNA"
FT /country="Chad:South"
FT /lat_lon="9.17 N 18.15 E"
FT /isolation_source="Manihot esculenta"
FT /collection_date="2008"
FT /db_xref="taxon:1188991"
FT CDS 172. .528
FT /gene="AV2 protein"
FT /product="AV2"
FT /protein_id="CCH63371.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT ETQDVQNVSKPRCP"
FT CDS 332. .1105
FT /gene="AV1"
FT /product="coat protein (CP)"
FT /protein_id="CCH63372.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1102. .1506)
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="CCH63373.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY"
FT CDS complement(1247. .1654)
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="CCH63374.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAIRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT CDS complement(1563. .2642)
FT /gene="AC1"
FT /product="replication associated protein (Rep)"
FT /protein_id="CCH63375.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR
FT VCKELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYNEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGHQT"
FT CDS complement(2252. .2485)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CCH63376.1"
FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRVLNHR
FT PMSKLTLKREGNFLTLDFSKSMPEVQGGKASI"
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SQ Sequence 2798 BP; 733 A; 549 C; 731 G; 785 T; 0 other;
he814064 Length: 2798 08-JUL-2012 Type: N Check: 3669 ..
1 accggatggc cgcgcccgaa aaagcagggg gaccccacaa tgaccgcgcc
51 cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt
101 cacgcgtgaa agtctagata tttgttgttt gtctttatag acttcgtcgc
151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
601 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa
651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
701 gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg
851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
951 atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac
1001 acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc
1051 tgtgtatgct actctgaaaa tacgcatcta tttttatgat gcagtgacaa
1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
1301 aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct
1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg
1551 aggtctaccc gcctacgtct gatggccctg gtcttcgctg tgcggtgttg
1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg
1651 gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag
1701 aaactcgtta tatgaggatg ttggtcctgg attgcagagg aagatagtgg
1751 gaatgccgcc tttaatttga attggcttcc cgtattttgt attactttgc
1801 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg
1851 gtcgacgtca tcaatgacgt tgtaccatgc gtcgtttgaa tataccttgg
1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
2001 aggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
2051 cctctatgtc ttctgggact tgtgtaaaag atgatgataa gaacggacta
2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
2151 gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
2201 gaagagcctc tgatttagac gacgcattca acgcgtctgc atatacctga
2251 gctaaatgct ggccttcccc ccttgcactt ctggcatcga cttggaaaag
2301 tccagcgtca agaaattccc ctcccttttc aatgtaagct ttgacatcgg
2351 acgatgattt agcaccctga atgttcggat ggaaatgtgt tgatcgggat
2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctt
2501 tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat
2551 tgggaaaggg cctcttcttt ggttaatgag catcggggat aggttatgaa
2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
2651 tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg
2701 gggcaatata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
2751 tccattcaaa atttgaattc cgaatatggc ggccatccga ttaatatt