Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus complete genome, isolate NZ-74
ACC No: HE819242
Dated: 2013-01-07 | Length: 2763 | CRC: -1737345968
ID HE819242; SV 1; circular; genomic DNA; STD; VRL; 2763 BP.
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AC HE819242;
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DT 07-JAN-2013 (Rel. 115, Created)
DT 07-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Tomato yellow leaf curl virus complete genome, isolate NZ-74
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KW complete genome.
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2763
RA Akhtar S.;
RT ;
RL Submitted (19-MAY-2012) to the INSDC.
RL Akhtar S., Sultan Qaboos University, College of Agricultural and Marine
RL Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN.
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RN [2]
RA Khan A.J., Al-Matroushi A.R.M.O., Akhtar S.;
RT "Diversity of begomoviruses on field crops in Oman";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2763
FT /organism="Tomato yellow leaf curl virus"
FT /host="Solanum lycopersicum"
FT /isolate="NZ-74"
FT /mol_type="genomic DNA"
FT /country="Oman:Nizwa"
FT /isolation_source="leaf"
FT /collection_date="2011"
FT /clone="T-30"
FT /db_xref="taxon:10832"
FT CDS 129. .479
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="CCH75830.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPLQQPCCCPHCPRHKQASIMDVQAHV
FT PKAQNIQNVSKP"
FT CDS 289. .1065
FT /gene="V1"
FT /gene_synonym="CP"
FT /product="coat protein"
FT /protein_id="CCH75831.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEGAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1062. .1466)
FT /gene="C3"
FT /gene_synonym="REn"
FT /product="replication enhancement protein"
FT /protein_id="CCH75832.1"
FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI
FT ISIQIRFNHNIRKVLGIHKCYLNFQIWTTLRPQTGRFLRVFRYQVLKYLDNLGVISINN
FT VIRAVDHVLYNVLENTINVTESHDIKYKFY"
FT CDS complement(1207. .1614)
FT /gene="C2"
FT /gene_synonym="TrAP"
FT /product="transcriptional activator protein"
FT /protein_id="CCH75833.1"
FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKPVRRKRIDLDCGCSYYLHI
FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFNTDKIQSQ
FT HQEGTGDSQMLSQLPNLDDLTASDWSFLKSI"
FT CDS complement(1538. .2602)
FT /gene="C1"
FT /gene_synonym="Rep"
FT /product="replication initiation protein"
FT /protein_id="CCH75834.1"
FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTSKKFIR
FT ICRELHENGIPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKTQALNILKEKAPRDFLLQFH
FT NLNSNLDRYFQEPPAPYVSPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL
FT FSSANQNPTPHSED"
FT CDS complement(2152. .2445)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CCH75835.1"
FT /translation="MGFLTCMFSSNSKESSSARTIDSSTSLPQPGQHISIRTFRELKAQ
FT AMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY"
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SQ Sequence 2763 BP; 745 A; 532 C; 625 G; 861 T; 0 other;
he819242 Length: 2763 07-JAN-2013 Type: N Check: 6757 ..
1 accggatggc cgcgctctac atgggtccca cacacgtcgc tatcatccaa
51 ccaaattgat gactgaaacg ttagataatt gtttatttgt ccttataaac
101 ttagtcccca agtttgttgt cttgcaatat gtgggatcca cttcttaatg
151 aatttcctga atccgttcac ggatttcgtt gtatgttagc tattaaatat
201 ttgcaggccg ttgaggaaac gtatgagccc aacactttgg gccacgattt
251 aattagggat cttatatctg ttgtaagggc tcgtgactat gtcgaagcga
301 cccggcgata taatcatttc cacgcccgtc tcgaaggttc gccgaaggct
351 gaacttcgac agcccctaca gcagccgtgc tgctgccccc attgtccaag
401 gcataaacaa gcgtcgatca tggacgtaca ggcccatgta ccgaaagccc
451 agaatataca gaatgtatcg aagccctgat gttccccgtg gatgtgaagg
501 cccatgtaaa gtccagtctt atgagcaacg ggatgatatt aagcatactg
551 gtattgttcg ttgtgttagt gatgttactc gtggatctgg aattacccac
601 agagtgggta agaggttctg tgttaaatcg atatattttt taggtaaagt
651 ctggatggat gaaaatatca agaagcagaa tcacactaat caggtcatgt
701 tcttcttggt tcgtgataga aggccctatg gaagcagccc aatggatttt
751 ggtcaggttt ttaatatgtt cgataatgag cccagtaccg caaccgtgaa
801 gaatgacctc cgggataggt ttcaagtgat gaggaaattt catgctaccg
851 ttattggtgg gccctctgga atgaaggaac aggctttagt taagagattt
901 tttagaatta acagtcatgt aacttataat catcaagaag gagccaagta
951 cgagaatcat actgaaaacg ccttgttgtt gtatatggca tgtacacatg
1001 cctctaaccc agtgtatgca actatgaaaa tacgcatcta tttctatgat
1051 tcaatatcaa attaataaaa tttatatttt atatcatgac tttcggttac
1101 atttattgtg ttttcaagta cattatacaa tacatgatca actgctctaa
1151 ttacattgtt tatggaaatt acacctaaat tatctaaata tttaagaact
1201 tgatatctaa atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt
1251 ccagatttgg aagttgagat aacatttgtg aatccccagt accttcctga
1301 tgttgtgatt gaatcttatc tgtattgaaa tgatgtcgtg gctcattaga
1351 aatggcctct cgtcgtggtt ggtgatcttg aaatacaggg gattttctat
1401 ctcccatata aaaacgccat tctgggcttg atgagcagtg atgagttccc
1451 cggtgcgtga atccatgatt gatgcagttg atgtggaggt agtatgagca
1501 tccgcagtcg aggtctatgc gcttacgtct gactggctta gtcttcgcta
1551 tgcggtgttg gattttgatt ggcacttgag aacagtggct cgtagagggt
1601 gacgaaggtt gcattcttga gagcccaatt ttttaaggat atgttttttt
1651 cttcgtctag atattcccta tatgacgagg taggtcctgg attgcagagg
1701 aagatagtgg gaattccccc tttaatttga atgggtttcc cgtactttgt
1751 gttgctttgc cagtccctct gggcccccat gaattctttg aagtgcttta
1801 aataatgcgg gtctacgtca tcaatgacgt tgtaccacgc atcattactg
1851 tatacctttg gacttaggtc tagatgtcca cacaaataat tatgtgggcc
1901 tagagacctg gcccacattg ttttgccggt tctgctatca ccctcgatga
1951 caatactatt aggtctccat ggccgcgcag cggaagacat gacgttctcc
2001 gacacccata cttcaagttc atctggaact tgattaaaag aagaagataa
2051 aaagggagaa acataaggag ccggaggctc ctgaaaatac ctatctaaat
2101 tactatttaa attatgaaat tggagtagaa agtctcttgg ggctttctcc
2151 ttcagtatat tgagggcctg agttttggac cctgcgttga ttgcctcggc
2201 atatgcgtcg ttggcagatt ggcaacctcc tctagctgat cttccatcga
2251 cctggaaaac tccatgatca aggatgtctc cgtctttctc catgtaggtt
2301 ttgacatcgc ttgagctttt agctccctga atgttcggat ggaaatgtgc
2351 tgacctggtt ggggaagtga ggtcgaagaa tctattgttc ttgcactgga
2401 actttccttc gaattggatg agaacatgca agtgaggaat cccattttcg
2451 tgaagctctc tgcagattct aatgaatttt ttggaagtgg gtgtttggag
2501 atttaataat tgggaaagag cttcctcttt agtaagagag cacttgggat
2551 aagtgagaaa ataatttttg gcatttattt taaaccgatt gggggctgcc
2601 atgctgactt agtcaatcgg tgtctctcaa tttgctctat gtatcggtgt
2651 actggagtcc tatatatatg gagactctaa tggcatattg gtaatttcgt
2701 aaaagcattt ttaaaagtaa aattcaaaaa tcaaaatcat aaagcggcca
2751 tccgtataat att