Sequence of DPV Cotton leaf curl Shadadpur virus

Cotton leaf curl Shadadpur virus defective genome, clone NCD2

ACC No: HE861732

Dated: 2012-06-19 | Length: 1159 | CRC: -517292188

                
ID   HE861732; SV 1; circular; genomic DNA; STD; VRL; 1159 BP.
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AC   HE861732;
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DT   19-JUN-2012 (Rel. 113, Created)
DT   19-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE   Cotton leaf curl Shadadpur virus defective genome, clone NCD2
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KW   complete genome.
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OS   Cotton leaf curl Shadadpur virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
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RN   [1]
RP   1-1159
RA   Tahir M.N.;
RT   ;
RL   Submitted (11-JUN-2012) to the INSDC.
RL   Tahir M.N., National Institute for Biotechnology &, Genetic Engineering,
RL   Agricultural Biotec, NIBGE, Jhang Road, Faisalabad, Punjab, 38000,
RL   PAKISTAN.
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RN   [2]
RA   Tahir M.N., Briddon R.W., Mansoor S.;
RT   "Diversity among natural deletion mutants of cotton begomoviruses";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1159
FT                   /organism="Cotton leaf curl Shadadpur virus"
FT                   /host="Gossypium hirsutum"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Tando Adam, Sindh"
FT                   /isolation_source="host leaf"
FT                   /collection_date="2007"
FT                   /clone="NCD2"
FT                   /db_xref="taxon:674996"
FT   CDS             complement(575. .850)
FT                   /gene="C4"
FT                   /product="truncated C4 protein"
FT                   /protein_id="CCI69934.1"
FT                   /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA
FT                   PTSNPTSTRTGTLSSGESFRSTEGQQEEGNRQPMTLTPLRSHFFHK"
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SQ   Sequence 1159 BP; 317 A; 208 C; 265 G; 369 T; 0 other;

he861732 Length: 1159  19-JUN-2012  Type: N  Check: 7609  ..

       1  accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg
      51  gccaatcata tgacgcgctc aaagcttaaa taattctccc gcctattata
     101  agtacttcgt tgctaagtat gcgtttgaaa aatgtgggat ccactgttaa
     151  atgagttccc cgacaccgtt cacggtttta gcgatggtga ctttgtggat
     201  agtatcctca tgtgaatgag gatcttcata ttctccatga tgcgaacgtc
     251  gactatgaac ctgactccct tcttgtttgt tccgctcgtt gtcatttctg
     301  cttatttgat ggaattgttt agtgtgcatg catttataga cttaatgaat
     351  agatattttg tgtagttgtg tggttgtgag tgatttatta ttatgtgatt
     401  gtccattaaa gggataaagt gatgattgag acgtattaca cgtgttgtca
     451  tgttggcttg aaatctttat acatgggttt gtaccgtata tacatatata
     501  tacggataga aaacggatga gaaaaggaaa aacggaactg aagaggaaaa
     551  acaaagaaaa gaaacaagga tatattattt atgaaagaaa tgggagcgca
     601  gcggcgtaag cgtcattggc tgtctgttgc cctcctcttg ctgaccttcc
     651  gtcgatctga aactctcccc actcgagagt gtccccgtcc ttgtcgatgt
     701  aggatttgac gtcggagctg gatttagctc cctgtatgtt cggatggaaa
     751  tgtgttgacc tgcttgggga gaccaagtcg aagaatcgca tattctggca
     801  cttgaatttc ccttcgaact ggatgagaac atgcaagtga ggagtcccat
     851  cttcgtgaag ctctctgcag attctaatat atttttttga agttggggtt
     901  tgtatattta ataactggga aagtgcttcc tctttggtga gagaacattt
     951  gggataagtg atgaaatagt ttttggaata aataccgttc cgctttggag
    1001  gcatgttgac taaaattgat caccgattga ccgcacttgc aactctcccc
    1051  ggtatatcgg tgatcaatat atagtgatca ccaaatggca taatggtaat
    1101  aaaaaaactt taatttgaaa ttcaaaccaa aaggctaaag cggccatccg
    1151  tttaatatt