Sequence of DPV Okra leaf curl Oman virus
Okra leaf curl Oman virus, complete genome, isolate OK-2
ACC No: HE862273
Dated: 2013-02-21 | Length: 2788 | CRC: -1395498316
ID HE862273; SV 1; circular; genomic DNA; STD; VRL; 2788 BP.
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AC HE862273;
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DT 07-JAN-2013 (Rel. 115, Created)
DT 21-FEB-2013 (Rel. 115, Last updated, Version 2)
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DE Okra leaf curl Oman virus, complete genome, isolate OK-2
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KW complete genome.
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OS Okra leaf curl Oman virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2788
RA Akhtar S.;
RT ;
RL Submitted (18-JUN-2012) to the INSDC.
RL Akhtar S., College of Agricultural and Marine Sciences, Sultan Qaboos
RL University, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123,
RL OMAN.
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RN [2]
RA Khan A.J., Akhtar S.;
RT "Diversity of begomoviruses on food crops in Oman";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2788
FT /organism="Okra leaf curl Oman virus"
FT /host="Abelmoschus esculentus"
FT /isolate="OK-2"
FT /mol_type="genomic DNA"
FT /country="Oman:Barka"
FT /isolation_source="host leaf"
FT /collected_by="Adil Alshihi"
FT /collection_date="2012"
FT /clone="133/3V"
FT /db_xref="taxon:1241370"
FT CDS 166. .534
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="CCI73896.1"
FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPCTLGYDLLSDL
FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRVILCTCPHCPRHKQASGLEQQAPI
FT QKTEDLSNLSQPRCPKGM"
FT CDS 326. .1102
FT /gene="V1"
FT /gene_synonym="CP"
FT /product="coat protein"
FT /protein_id="CCI73897.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW
FT NNRPLYRKPRIYRIYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGVGLTH
FT RTGKRFTIKSIYILGKVWMDDNIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFHMFDN
FT EPSTATVKNDLRDRFQVMRKFSATVTGGPSGMKEQVPVRRFFKLNSQTVYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1099. .1500)
FT /gene="C3"
FT /gene_synonym="REn"
FT /product="replication enhancement protein"
FT /protein_id="CCI73898.1"
FT /translation="MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMV
FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNV
FT IRAVNHVLYDVLQTTVASEFTHNIQIKLY"
FT CDS complement(1244. .1648)
FT /gene="C2"
FT /gene_synonym="TrAP"
FT /product="transcriptional activator protein"
FT /protein_id="CCI73899.1"
FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT TCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQP
FT QEGIGDSQMFHELQGLDDLTPSDWSFLKRI"
FT CDS complement(1548. .2636)
FT /gene="C1"
FT /gene_synonym="Rep"
FT /product="replication initiation protein"
FT /protein_id="CCI73900.1"
FT /translation="MAAPNRFRINAKNYFLTYPKCSLTKEEALSQLLNLQTPTSKKFIR
FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH
FT NLNCNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWAAENVVDAAARPSRPISIVIEGE
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNIIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFITLSNPL
FT YSGTNQSSASGGQEESNQETQD"
FT CDS complement(2186. .2479)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CCI73901.1"
FT /translation="MGLLTCMFSSNSKGSSSARTIDSSTSPPQPGQHISIRTFRELKAQ
FT AMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY"
XX
SQ Sequence 2788 BP; 690 A; 598 C; 636 G; 864 T; 0 other;
he862273 Length: 2788 21-FEB-2013 Type: N Check: 1002 ..
1 accggatggc cgcgcgattt tttttgtggt ccccgcccca cgtgaacacg
51 tcgcgcgagt tctgaagatg tcgcgcgatg ctgtccaatc agaacgcgcg
101 ctctacgcat tataatttga aatttgaaat ataaacttgc tcccctaagt
151 ttgtccggca taactatgtg ggatccgtta ttgaacgact tccctgaatc
201 cgttcacggt ttccgttgta tgctcgccgt gaaatatttg caggctgttc
251 gagagtcgta cgatccttgc actcttgggt acgatcttct tagcgatctt
301 atcggagttg ttcgccgtac caactatgtc gaagcgacca gcagatatca
351 tcatttccac tcccgcctcg aaagtgcgtc gccgtctgaa cttcgacagc
401 cccgggttat cctctgcacg tgcccccact gtcctcgtca caaacaagcg
451 tcgggcctgg aacaacaggc ccctatacag aaaaccgagg atttatcgaa
501 tttatcgcag cccagatgtc ccaaagggat gtgaaggtcc ttgtaaggtc
551 cagtcttatg aacagcgtga tgatgtcaag catacgggca ttgttcgatg
601 tgtgtcggat gttactaagg gtgttggtct tactcatcgt actggaaagc
651 gtttcactat caaatctatc tatattcttg gtaaggtatg gatggatgac
701 aacattaaga agcagaatca caccaacaat gtaatgtttt tccttgtccg
751 tgatagaaga ccctatggca atagtcccat ggattttgga caggtttttc
801 acatgtttga caacgaacct agcactgcca ctgtaaagaa tgatttgcga
851 gatcgttttc aggtgatgcg taagtttagt gctactgtaa ctggtggccc
901 ttctgggatg aaggaacaag ttcctgttcg taggtttttt aagcttaata
951 gtcagactgt gtataaccat caagaagctg cgaagtatga gaatcatact
1001 gagaatgctt tgttgttgta tatggcatgt actcatgcct caaaccctgt
1051 gtatgctacg ttaaagatac ggatctattt ctacgattcg gtatctaatt
1101 aatataattt tatttgaata ttgtgcgtga attcacttgc cacggttgtt
1151 tgcaatacat cgtacaaaac atgattgact gccctaatta cattgttaat
1201 tgaaattacg cctattctat acaaatattt cataatctgc ttcctaaata
1251 cgtttaagaa aagaccagtc ggagggcgtg agatcgtcca gaccctgaag
1301 ttcatgaaac atttgtgaat ccccaattcc ttcctgaggt tgtagttgaa
1351 tcttatctgc atctctacca ttgtttgatt cccgtgcgtt agaggaatct
1401 cctttatggt tttgaaatac aggggattgt tgattgtcca gataagtacg
1451 ccattctctg tctgatgcgc agtgatgagt tcccctgtgc gtgaatccat
1501 tgtctctgca cgtgaaggct acgtatactg tgcaaccaca agggatgtca
1551 atcctgcgtc tcctgattgc tctcttcttg gcctcccgat gctgaacttt
1601 gattggtacc tgagtacagc ggatttgaga gggtgatgaa ggtcgcattc
1651 tttaatgccc aggattttaa tgctgagttc ttgtcctcgt ctaagaactc
1701 tttatagctt gcattgggcc ctggattgca gaggaagatt gttgggatgc
1751 cccctttaat ttgaactggt ttcccgtatt ttgtgttgga ttgccagtcc
1801 ctttgggccc ccatgaactc tttaaagtgc ttgaggaagt gcggatcgac
1851 gtcatcaatg atgttatacc aagcgtcgtt actgtacacc tttggactta
1901 gatctaaatg cccacataga taattatgtg ggcctagtga cctagcccat
1951 acggtctttc ctgttctgct ttccccttca atcactatac taatcggtct
2001 acttggccgc gcagcggcat cgacgacgtt ctcggccgcc cactcttcaa
2051 gttcttctgg aacttgatcg aacgaagaag aagaaaaagg agaaacataa
2101 ggagctggtg gctcctgaaa atacctatct aaattacaat ttaaattatg
2151 aaattggagt agaaagtctc ttggggcttt ctccttcagt atattgaggg
2201 cctgagcttt ggaccctgcg ttgattgcct cggcatatgc gtcgttggca
2251 gattggcaac ctcctctagc tgatcttcca tcgacctgga aaactccatg
2301 atcaaggatg tctccgtctt tctccatgta ggttttgaca tcgcttgagc
2351 ttttagctcc ctgaatgttc ggatggaaat gtgctgacct ggttggggag
2401 gtgaggtcga agaatctatt gttcttgcac tggaacttcc cttcgaattg
2451 gatgagaaca tgcaagtgag gagtcccatc ttcgtgaagc tctctgcaga
2501 ttctaatgaa ttttttggaa gtgggtgttt ggagatttaa taattgggaa
2551 agtgcttcct ctttagtaag agagcacttg ggataagtga gaaaataatt
2601 tttggcattt attctaaacc gattgggggc tgccatgctg acttagtcaa
2651 tcggtgtctc tcaatttgct ctatgtattg gtgtactgga gtcctatata
2701 tatggagact ctaatggcat aattgtaata aaagaacttt aatttgaatt
2751 tcaaatgaaa agcctaaagc ggccatccgt ctaatatt