Sequence of DPV Apple mosaic virus

Apple mosaic virus CP gene for coat protein, genomic RNA, isolate HL-USA

ACC No: HE866941

Dated: 2012-10-29 | Length: 657 | CRC: -512450873

                
ID   HE866941; SV 1; linear; genomic RNA; STD; VRL; 657 BP.
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AC   HE866941;
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DT   29-OCT-2012 (Rel. 114, Created)
DT   29-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE   Apple mosaic virus CP gene for coat protein, genomic RNA, isolate HL-USA
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KW   .
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OS   Apple mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Ilarvirus.
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RN   [1]
RP   1-657
RA   Grimova L.;
RT   ;
RL   Submitted (29-JUN-2012) to the INSDC.
RL   Czech University of Life Sciences Prague, Department of Plant Protection,
RL   Kamycka 129, Praha 6, 165 21, CZECH REPUBLIC.
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RN   [2]
RA   Grimova L., Winkowska L., Rysanek P., Svoboda P., Petrzik K.;
RT   "Coat protein variability of Apple mosaic virus reflects host preference";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .657
FT                   /organism="Apple mosaic virus"
FT                   /segment="3"
FT                   /host="Humulus lupulus"
FT                   /isolate="HL-USA"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /PCR_primers="fwd_name: 87E5, fwd_seq:
FT                   ggccattagcgacgattagtc, rev_name: 87E6, rev_seq:
FT                   atgctttagtttcctctcgg"
FT                   /db_xref="taxon:12319"
FT   CDS             1. .657
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CCI88178.1"
FT                   /translation="MVCKYCGHTHPGACVNCKWCHGTNRPAPPKRAVIRAQANPNKGKN
FT                   PVKGGPSVRRTAWEVRGPNVEPKIPKGHRALSSREVTATVEGRFVDIDFADVFRDLLEK
FT                   DLKVYTFIIRVNSLSSNGWIGLVEDYDESNPKGPNPMDRKGFKKDQPRGWQWEAPPNTT
FT                   LDDFVKKFRLVLEFKTNFAAGAKVFMRDLYVITSELPPVQIPMNVLLIDEDLLEL"
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SQ   Sequence 657 BP; 178 A; 130 C; 189 G; 160 T; 0 other;

he866941 Length: 657  29-OCT-2012  Type: N  Check: 6422  ..

       1  atggtctgca agtactgtgg tcacactcac cctggagctt gcgtgaattg
      51  caagtggtgt catggaacga atagacctgc tcctccgaag cgcgctgtta
     101  ttcgcgccca agcgaacccg aataagggta agaaccccgt gaagggaggt
     151  ccatccgtga ggaggacagc ttgggaggtt agaggcccga atgtggaacc
     201  aaagattcca aagggtcaca gggctctaag cagtcgtgaa gtgactgcta
     251  cggttgaagg caggtttgtg gatatcgact ttgccgatgt cttccgtgat
     301  ctgctagaaa aggatttgaa ggtgtatacc ttcataatcc gagtaaacag
     351  tctatcctct aatgggtgga ttggtctagt agaggattac gatgagagta
     401  atccgaaagg tccgaatccg atggaccgaa agggcttcaa aaaggaccaa
     451  ccgagaggtt ggcagtggga agctcctcca aacacaactc ttgatgactt
     501  cgtgaagaag tttaggttgg tcttggagtt taagacgaat ttcgccgctg
     551  gtgcgaaagt ctttatgagg gatttgtacg tgataacgag tgagttacca
     601  ccggtgcaaa taccgatgaa tgttctactt atcgatgaag acttgttaga
     651  actgtag