Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus partial ORF2a gene and ORF2b gene, segment RNA2, genomic RNA, isolate Z1.4/09

ACC No: HE971504

Dated: 2012-11-25 | Length: 539 | CRC: -2067932606

                
ID   HE971504; SV 1; linear; genomic RNA; STD; VRL; 539 BP.
XX
AC   HE971504;
XX
DT   25-NOV-2012 (Rel. 114, Created)
DT   25-NOV-2012 (Rel. 114, Last updated, Version 1)
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DE   Cucumber mosaic virus partial ORF2a gene and ORF2b gene, segment RNA2,
DE   genomic RNA, isolate Z1.4/09
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
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RN   [1]
RP   1-539
RA   Jacquemond M.;
RT   ;
RL   Submitted (26-JUL-2012) to the INSDC.
RL   INRA, Station de Pathologie Vegetale, Domaine Saint Maurice, BP 9484143
RL   Montfavet Cedex, FRANCE.
XX
RN   [2]
RA   Ben Tamarzizt H., Montarry J., Girardot G., Fakhfakh H., Tepfer M.,
RA   Jacquemond M.;
RT   "Cucumber mosaic virus (CMV) populations in Tunisian pepper crops are
RT   mainly composed of virus reassortants with resistance-breaking properties";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .539
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA2"
FT                   /host="Capsicum annuum"
FT                   /isolate="Z1.4/09"
FT                   /mol_type="genomic RNA"
FT                   /country="Tunisia"
FT                   /db_xref="taxon:12305"
FT   CDS             <1. .384
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="ORF2a"
FT                   /product="RNA-dependent RNA polymerase, RdRp"
FT                   /protein_id="CCK33238.1"
FT                   /translation="AFKKYTANFQSYKELYYSDRRQCELINSFCSTEFRVERVNSNKQR
FT                   KKYGIERRCNDKRRTPTGSYGGGEEAETKVSQTESTGTRSQKSQRESAFKSQTIPLPTV
FT                   LPSGWFGTDRVMPPCERGGVTRV"
FT   CDS             143. .475
FT                   /transl_table=1
FT                   /gene="ORF2b"
FT                   /product="RNA silencing suppressor"
FT                   /protein_id="CCK33239.1"
FT                   /translation="MELNVGAMTNVELQLARMVEAKKQRRRSHKQNRRERGHKSPSERA
FT                   RSNLRLFRFLPFYQVDGSELTGSCRHVNVAELPESEASRLELSAEDHDFDDTDWFAGNE
FT                   WAEGAF"
XX
SQ   Sequence 539 BP; 144 A; 122 C; 143 G; 130 T; 0 other;

he971504 Length: 539  25-NOV-2012  Type: N  Check: 2253  ..

       1  gcctttaaga agtacaccgc taatttccag tcctacaaag aactctatta
      51  ttcagatcgt cgtcagtgcg aattgatcaa ttcgttttgt agtacagagt
     101  tcagggttga gcgtgtaaat tccaacaaac agcgaaagaa atatggaatt
     151  gaacgtaggt gcaatgacaa acgtcgaact ccaactggct cgtatggtgg
     201  aggcgaagaa gcagagacga aggtctcaca aacagaatcg acgggaacga
     251  ggtcacaaaa gtcccagcga gagagcgcgt tcaaatctca gactattccg
     301  cttcctaccg ttctaccaag tggatggttc ggaactgaca gggtcatgcc
     351  gccatgtgaa cgtggcggag ttacccgagt ctgaggcctc tcgtttagag
     401  ttatcggcgg aagaccacga ttttgacgat acagattggt tcgccggtaa
     451  cgaatgggcg gaaggtgctt tctgaaacct ccccttccgc atctccctcc
     501  ggttttctat ggtgggagct gagttggcag tgttgctat