Sequence of DPV Tomato leaf curl Joydebpur virus
Tomato leaf curl Joydebpur virus-India [India/Jaunpur/Chilli/2007] clone pChJauB1 segment DNA-A, complete sequence.
ACC No: HM007102
Dated: 2012-04-11 | Length: 2771 | CRC: 897322618
ID HM007102; SV 1; circular; genomic DNA; STD; VRL; 2771 BP.
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AC HM007102;
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DT 11-APR-2012 (Rel. 112, Created)
DT 11-APR-2012 (Rel. 112, Last updated, Version 1)
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DE Tomato leaf curl Joydebpur virus-India [India/Jaunpur/Chilli/2007] clone
DE pChJauB1 segment DNA-A, complete sequence.
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KW .
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OS Tomato leaf curl Joydebpur virus-India [India/Jaunpur/Chilli/2007]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2771
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
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RN [2]
RP 1-2771
RA Chattopadhyay B., Singh A.K., Chakraborty S.;
RT ;
RL Submitted (16-MAR-2010) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Delhi, Delhi 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2771
FT /organism="Tomato leaf curl Joydebpur virus-India
FT [India/Jaunpur/Chilli/2007]"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="India/Jaunpur/Chilli/2007"
FT /mol_type="genomic DNA"
FT /country="India:Jaunpur"
FT /collection_date="Feb-2007"
FT /clone="pChJauB1"
FT /db_xref="taxon:1000677"
FT gene 147. .503
FT /gene="AV2"
FT CDS 147. .503
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /note="suppressor of RNAi"
FT /protein_id="AEA76784.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQADEQ
FT EAQDVQDVQKPRCA"
FT gene 307. .1077
FT /gene="AV1"
FT CDS 307. .1077
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="nucleoprotein; responsible for encapsidation of
FT viral DNA and insect transmission"
FT /protein_id="AEA76785.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVNNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1080. .1484)
FT /gene="AC3"
FT CDS complement(1080. .1484)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /note="replicational enhancer protein; enhances viral
FT replication"
FT /protein_id="AEA76788.1"
FT /translation="MDSRTGEPITAAQAENSVLIWEITNPLYFKIIEHHHRPFLRNQDI
FT ITVQVRFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLKFLNNFAVISINN
FT VIRAVDHVLWNVLAQTIHVQSSNIIKFNLY"
FT gene complement(1225. .1629)
FT /gene="AC2"
FT CDS complement(1225. .1629)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /note="transcriptional activator protein; transactivates
FT virion sense ORFs and suppressor of RNAi"
FT /protein_id="AEA76787.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREFRAYLGDNKSPVFQDNRAPPPAIPEEPRHHNSPSTVQSQP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1532. .2617)
FT /gene="AC1"
FT CDS complement(1532. .2617)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /note="replicase; responsible for viral replication"
FT /protein_id="AEA76786.1"
FT /translation="MPPPNKFRINAKNYFLTYPKCSLAKEEALSQLQNLDTPVNKLFIR
FT VCRELHENGEPHLHVLIQFEGKFQCKNHRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYV
FT EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINTGSKAAALNILREKAPKDYVLQFH
FT NLNSNLDRIFTPPLEVYISPFSSSSFDEVPEELEEWAAENVVGAAARPLRPVSVVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL
FT YSSSNQSAAQAGEEGDQASSS"
FT gene complement(2167. .2460)
FT /gene="AC4"
FT CDS complement(2167. .2460)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /note="involved in symptom expression and suppressor of
FT RNAi"
FT /protein_id="AEA76789.1"
FT /translation="MGNLIYTCSSNLRENSNAKITDSSTSFPHPGQHISIRTFRELRAL
FT QMSRPMWRKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF"
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SQ Sequence 2771 BP; 749 A; 580 C; 643 G; 799 T; 0 other;
hm007102 Length: 2771 11-APR-2012 Type: N Check: 2578 ..
1 accggatggc cgcgattttt tttcaagtgg gccccaccac gcacgtgctg
51 aaaaggacaa ttggaccaat tagaaactcc gctcaaagct taattatttc
101 gtggtcccct atataaactt gggctccaag tagtgcactc tttccaatgt
151 gggatccgtt agtaaacgag tttcctgaaa ccgttcacgg ttttaggtgt
201 atgctagccg ttaaatatct gcagctagta gaaaagacgt attctccaga
251 cactctcggg tacgatttaa tccgtgattt aatttcagtc atcagggcta
301 gaaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcctc
351 gaaggtacgc cgccgtctca acttcgacag cccatatacc agccgtgctg
401 ctgcccccat tgtccgcgtc accaaagcaa aagcatgggc caacaggccg
451 atgaacagga agcccaggat gtacaggatg tacagaagcc cagatgtgcc
501 tagaggatgt gaaggcccgt gtaaggtcca gtcttttgag tctagacatg
551 atgtccaaca cataggtaaa gtcatgtgtg ttagtgatgt tactcgtgga
601 actgggctga cccatcgagt gggtaaaagg ttttgtgtta agtccgtcta
651 tgttctgggc aagatttgga tggatgagaa catcaagact aagaatcaca
701 cgaatagcgt tatgtttttt cttgttagag atcgtaggcc cgtagataag
751 ccccaagact ttggtgaggt atttaacatg tttgataatg agcccagtac
801 ggcgactgtg aagaacgtgc atcgtgacag gtatcaggtg ctgaggaagt
851 ggcatgcaac tgtgactggt ggacaatatg catcaaagga gcaagctctc
901 gtgaagaagt ttattagggt taataattat gttgtgaata accagcaaga
951 ggctggtaaa tatgagaatc atagtgagaa tgcattgatg ttgtatatgg
1001 cgtgtaccca tgcctctaac cctgtgtatg cgacgttgaa gatccgtatc
1051 tatttttacg actctgtaac caactgaaat taataaagat tgaattttat
1101 tatatttgaa ctttgtacat gaattgtttg tgctaataca ttccataata
1151 catggtcgac agctctaatg acattgttta tactaattac agcaaaatta
1201 tttaaaaact tcaacacttg ggtcctaaat acccttaaga aatgaccagt
1251 ccgaggctgt aaggtcgtcc agattcggaa ggttagaaaa catttgtgta
1301 tccccaacgc tttcctcagg ttgtgattga accgtacttg gactgttatg
1351 atgtcttggt tcctcaggaa tggccggtgg tggtgctcga ttatcttgaa
1401 atacagggga tttgttatct cccagataag cacggaattc tctgcttgag
1451 ctgcagtgat gggttcccct gtgcgtgaat ccatagccgt ggcagcgtaa
1501 tgcgatgaaa tatgaacagc cgcagtctag gtcaactcga cgacgcctgg
1551 tccccctctt cgccagcctg tgctgcactt tgattggaac ttgagtagag
1601 tgggccttcg agggtgatga aggtcgcatt ctttaaagcc caatttttga
1651 gtgcggaatt cttctcttca tccaagaact ctttatagct ggaattgggt
1701 cctggattgc agaggaagat agcgggaatt ccacctttaa tttgaactgg
1751 ctttccgtat tttgtatttg attgccagtc cctttgggcc cccatgaatt
1801 ccttaaagtg ctttaggtaa tgcgggtcga cgtcatcaat gacgttatac
1851 caggcgtcat tactgtagac ctttgggcta aggtctaagt gaccacacaa
1901 atagttgtgt ggacccaacg accgagccca catggtcttc cctgttcgac
1951 tatcaccctc tatgactaca cttacgggtc tcaaaggccg cgcagcggca
2001 ccaacgacgt tctccgcagc ccattcctca agttcctcgg gaacttcatc
2051 aaaagaagaa gaagaaaaag gagaaatata aacctccaac ggaggtgtaa
2101 aaatcctatc taaattgcta tttaaattat gaaactgtaa aacataatct
2151 ttgggagctt tctcccttaa aatattgagg gccgcagctt tggaccctgt
2201 attgattgcc tcggcatatg cgtcgttggc agattgctga cctcctctag
2251 ctgatctgcc atcgatctgg aaaactccaa aatcaatgaa gtctccgtct
2301 ttctccacat aggccttgac atctgtagag ctcttagctc cctgaatgtt
2351 cggatggaaa tgtgctgacc gggatgggga aacgaggtcg aagaatctgt
2401 gatttttgca ttggaatttt ccctcaaatt ggatgagcac gtgtagatga
2451 ggttccccat tttcgtgtag ttctctgcaa accctaataa ataatttatt
2501 tactggagtg tctaagtttt gtaattggga aagtgcttcc tctttagcaa
2551 gagagcactt aggatatgtg aggaaataat ttttggcatt tattctgaat
2601 ttatttggag gaggcattga cttggtcaat cggtgtccag caaacttggc
2651 tatgcaattg gtgtctggtg tcttatttat atgtagacac cgaatggcat
2701 atgtgtaatt ttagaaataa ccttaattca aaattcaaat tccgacaaaa
2751 gcggccatcc gcactaatat t