Sequence of DPV Tomato leaf curl Joydebpur virus
Tomato leaf curl Joydebpur virus-India [India/Kolkata/Chilli/2007] clone pChKolB67 segment DNA-A, complete sequence.
ACC No: HM007108
Dated: 2012-04-11 | Length: 2763 | CRC: -1559895824
ID HM007108; SV 1; circular; genomic DNA; STD; VRL; 2763 BP.
XX
AC HM007108;
XX
DT 11-APR-2012 (Rel. 112, Created)
DT 11-APR-2012 (Rel. 112, Last updated, Version 1)
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DE Tomato leaf curl Joydebpur virus-India [India/Kolkata/Chilli/2007] clone
DE pChKolB67 segment DNA-A, complete sequence.
XX
KW .
XX
OS Tomato leaf curl Joydebpur virus-India [India/Kolkata/Chilli/2007]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2763
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
XX
RN [2]
RP 1-2763
RA Chattopadhyay B., Singh A.K., Chakraborty S.;
RT ;
RL Submitted (17-MAR-2010) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Delhi, Delhi 110067, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2763
FT /organism="Tomato leaf curl Joydebpur virus-India
FT [India/Kolkata/Chilli/2007]"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="India/Kolkata/Chilli/2007"
FT /mol_type="genomic DNA"
FT /country="India:Kolkata"
FT /collection_date="Nov-2007"
FT /clone="pChKolB67"
FT /db_xref="taxon:1000678"
FT gene 148. .504
FT /gene="AV2"
FT CDS 148. .504
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /note="suppressor of RNAi"
FT /protein_id="AEA76802.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKMYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQ
FT EAQDVQDVQKPRCS"
FT gene 308. .1078
FT /gene="AV1"
FT CDS 308. .1078
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="nucleoprotein; responsible for encapsidation of
FT viral DNA and insect transmission"
FT /protein_id="AEA76803.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTCGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1075. .1479)
FT /gene="AC3"
FT CDS complement(1075. .1479)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /note="replicational enhancer protein; enhances viral
FT replication"
FT /protein_id="AEA76806.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHQRPFLMNHDI
FT ITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN
FT VFRAVDHVLWNVLAQTIYVQSSNVIKFNIY"
FT gene complement(1220. .1624)
FT /gene="AC2"
FT CDS complement(1220. .1624)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /note="transcriptional activator protein; transactivates
FT virion sense ORFs and suppressor of RNAi"
FT /protein_id="AEA76805.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHDHGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPPAPIPNEPRHHNSPSTVQSQP
FT EESVGDTQMFSNIPNLDDLTASDWSFLKGL"
FT gene complement(1527. .2612)
FT /gene="AC1"
FT CDS complement(1527. .2612)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /note="replicase; responsible for viral replication"
FT /protein_id="AEA76804.1"
FT /translation="MAPPNKFRINAKNYFLTYPKCSLTKEEALSQLQNLETPVNKLFIR
FT VCRELHKNGEPHLHVLLQFEGKFQCKNHRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYV
FT EKDGDLIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPPEVYVSPFSSSSFDQVPEELEEWAAENVVDAAARPLRPVSIVIEGD
FT SRTGKTLWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNSALKYWALKNATFITLEGPL
FT YSGSNQSAAQASQEGDQASSR"
FT gene complement(2162. .2455)
FT /gene="AC4"
FT CDS complement(2162. .2455)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /note="involved in symptom expression and suppressor of
FT RNAi"
FT /protein_id="AEA76807.1"
FT /translation="MGNLIYTCSSNSRENSNAKITDSSTSFPHPGQHISIRTFRELRAL
FT QMSRPMWKKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF"
XX
SQ Sequence 2763 BP; 736 A; 571 C; 648 G; 808 T; 0 other;
hm007108 Length: 2763 11-APR-2012 Type: N Check: 7415 ..
1 accggatggc cgcgattttt tttctagtgg gccccaccat gcacgtgctg
51 acaaggacaa ttggaccaat gagaaacgcc gctcaaagcc ttaattgttt
101 cgtggtcccc tatataaact tggcgcccaa gtagtgcact ctttccaatg
151 tgggatccat tagtaaacga gtttcctgaa accgttcacg gttttaggtg
201 tatgctagcc gttaaatatc ttcagctagt agaaaagatg tattctccag
251 atactctcgg ctacgatttg atccgggatt taatttcagt catcagggcc
301 agaaattatg tcgaagcgac cagcagatat aatcatttcc acgcccgcct
351 cgaaggtacg ccgccgtctc aacttcgaca gcccatattc cagccgtgct
401 gctgccccca ttgtccgcgt caccaaagca aaagcatggg cgaacaggcc
451 catgaacagg aagcccagga tgtacaggat gttcagaagc ccagatgttc
501 ctagaggctg tgaaggccca tgtaaggtcc agtcgtttga gtctagacat
551 gatgtccaac acataggtaa agtcatgtgt gttagtgatg ttacttgtgg
601 aactgggctg acccatcgag ttggtaaaag gttttgtgtt aagtccgtct
651 atgtactggg caagatttgg atggatgaga acatcaagac taagaatcac
701 acgaatagtg ttatgttttt ccttgttaga gatcgtaggc ccgtagataa
751 gccccaagac tttggtgagg tgtttaacat gtttgacaat gagcccagta
801 cggctaccgt aaagaacgtg catcgcgata ggtatcaggt gctcaggaag
851 tggcatgcaa ctgtgactgg tggtcaatat gcatcgaagg agcaagctct
901 cgtgaagaag tttattaggg ttaataatta tgttgtgtat aaccagcaag
951 aggctggcaa gtatgaaaac catactgaga atgcattgat gttgtacatg
1001 gcgtgtactc atgcctctaa ccctgtgtat gctactttga aaatacggat
1051 ctatttctat gattccgtaa ccaattaata aatattgaat tttattacgt
1101 ttgaactttg tacataaatt gtttgcgcta atacattcca taatacatga
1151 tcgactgctc taaatacatt gtttatacta attacagcaa aattatttaa
1201 aaactgcaac acttgggtcc taaagaccct taagaaatga ccagtccgag
1251 gctgtaaggt cgtccagatt cggaatgtta gaaaacattt gtgtatcccc
1301 aacgctttcc tcaggttgtg attgaactgt acttggactg ttatgatgtc
1351 gtggttcatt aggaatgggc gctggtggtg ctcggttatc ttgaaataca
1401 ggggatttgt tatctcccag ataaacacgc cattctcggc ttgagctgca
1451 gtgatgggtt cccctgtgcg tgaatccatg gtcgtggcag cgtaatgcta
1501 tgaagtatga acagccgcag tctaggtcaa cgcgacgacg cctggtcccc
1551 ttcttggcta gcctgtgctg cactttgatt ggaacctgag tagagtgggc
1601 cttcgagggt gatgaaggtc gcattcttta aagcccaata tttgagagcg
1651 gaattcttct cttcatccaa gtactcttta tagctggaat tgggtcctgg
1701 attgcagagg aagatagcgg gaattccacc tttaatttga actggctttc
1751 cgtattttgt atttgattgc cagtcccttt gggcccccat gaattcttta
1801 aagtgtttta gataatgggg atcaacgtca tcaatgacgt tgtaccaggc
1851 gtcattactg tagaccttag ggctaaggtc gagatgacca cacaaatagt
1901 tgtgtggacc caacgaccta gcccacaacg tcttgcccgt tcgactatca
1951 ccctctatga ctatacttac gggccttaat ggccgcgcag cggcatccac
2001 gacgttctcc gcagcccatt cttcaagttc ctcgggaact tgatcaaaag
2051 aagaggaaga aaaaggagaa acataaacct ccggtggagg tgtaaaaatc
2101 ctatctaaat tagcatttaa attatgaaac tgtaaaacat aatctttggg
2151 agctttctcc cttaaaatat tgagggccgc agctttggac cctgaattga
2201 ttgcctcggc atatgcgtcg ttggcagatt gctgacctcc tctagctgat
2251 ctgccatcga tctggaaaac tccaaaatca atgaggtctc cgtctttttc
2301 cacataggcc ttgacatctg tagagctctt agctccctga atgttcggat
2351 ggaaatgtgc tgaccgggat ggggaaacga ggtcgaagaa tctgtgattt
2401 ttgcattgga attttccctc gaattggagg agcacgtgta gatgaggttc
2451 cccatttttg tgtagttctc tgcaaaccct aataaataat ttatttactg
2501 gagtttctaa gttttgtaat tgggaaagtg cttcttcttt agtaagagag
2551 cacttgggat atgtgaggaa ataatttttg gcatttattc ggaatttatt
2601 tggaggagcc attgacttgg tcaatcggtg tctagcaaac ttggctatgc
2651 aattggtgtc tggtgtctta tttatatgta gacaccgaat ggcatatgag
2701 taattgtgga aattatttta attcaaattt caaaatgccc aaagcggcca
2751 tccgtataat att