Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus-India [India/New Delhi/Chilli/2009] clone pChNDK31 segment DNA-A, complete sequence.
ACC No: HM007113
Dated: 2012-04-11 | Length: 2739 | CRC: 1444285168
ID HM007113; SV 1; circular; genomic DNA; STD; VRL; 2739 BP.
XX
AC HM007113;
XX
DT 11-APR-2012 (Rel. 112, Created)
DT 11-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE Tomato leaf curl New Delhi virus-India [India/New Delhi/Chilli/2009] clone
DE pChNDK31 segment DNA-A, complete sequence.
XX
KW .
XX
OS Tomato leaf curl New Delhi virus-India [India/New Delhi/Chilli/2009]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2739
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
XX
RN [2]
RP 1-2739
RA Khuswaha N., Singh A.K., Chattopadhyay B., Chakraborty S.;
RT ;
RL Submitted (17-MAR-2010) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Delhi, Delhi 110067, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /organism="Tomato leaf curl New Delhi virus-India
FT [India/New Delhi/Chilli/2009]"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="India/New Delhi/Chilli/2009"
FT /mol_type="genomic DNA"
FT /country="India:New Delhi"
FT /collection_date="Feb-2009"
FT /clone="pChNDK31"
FT /db_xref="taxon:1000683"
FT gene 120. .458
FT /gene="AV2"
FT CDS 120. .458
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /note="suppressor of RNAi"
FT /protein_id="AEA76820.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ
FT KTQNVQNV"
FT gene 280. .1050
FT /gene="AV1"
FT CDS 280. .1050
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="nucleoprotein; responsible for encapsidation of
FT viral DNA and insect transmission"
FT /protein_id="AEA76821.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSLYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1047. .1457)
FT /gene="AC3"
FT CDS complement(1047. .1457)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /note="replicational enhancer protein; enhances viral
FT replication"
FT /protein_id="AEA76824.1"
FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH
FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMLGVIGI
FT YNVIRAVYHVLDNVMEQTIDVQTSYDIKLDIY"
FT gene complement(1177. .1596)
FT /gene="AC2"
FT CDS complement(1177. .1596)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /note="transcriptional activator protein; transactivates
FT virion sense ORFs and suppressor of RNAi"
FT /protein_id="AEA76823.1"
FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCTYYISIN
FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFEARQQALPNTARHHQDSNTIQPQP
FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP"
FT gene complement(1499. .2584)
FT /gene="AC1"
FT CDS complement(1499. .2584)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /note="replicase; responsible for viral replication"
FT /protein_id="AEA76822.1"
FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH
FT NLISNLDRIFQPRFEVYVFPFSISSFDRVPPELVDWASVNVVCAAARPFRPISIDIEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL
FT YSGRENIAPPEEEEEHSQEAS"
FT gene complement(2251. .2427)
FT /gene="AC4"
FT CDS complement(2251. .2427)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /note="involved in symptom expression and suppressor of
FT RNAi"
FT /protein_id="AEA76825.1"
FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQR
FT QMSKHTSTKTETF"
XX
SQ Sequence 2739 BP; 746 A; 596 C; 611 G; 786 T; 0 other;
hm007113 Length: 2739 11-APR-2012 Type: N Check: 3300 ..
1 accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca
51 cgctacatgg cctatttagt gcgtggggac caataaatag acttgctcac
101 caagtttgga tccacaaaca tgtgggatcc attgttgcac gaatttccag
151 aaagcgttca tggtctaagg tgcatgttag ctgtaaaata tctccaagag
201 atagaaaaga actattcccc agacacagtc ggctacgatc ttgtccgaga
251 tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagat
301 atcatcattt caactcccgc atcgaaggta cgccgacgtc tcaacttcga
351 cagcccctat ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag
401 caaaggcctg gaccaacagg ccgatgaaca gaaaacccag aatgtacaga
451 atgtatagaa gtccggacgt gccaaggggc tgtgaaggcc cttgcaaggt
501 gcagtccttt gaatctaggc acgatgtctc tcatattggc aaagtcatgt
551 gcgttagtga tgttactcga ggaactggac tcacacatcg cgtagggaag
601 cgattttgtg tgaaatctct ctatgtgctg gggaagatat ggatggatga
651 aaacatcaag acaaaaaacc atactaacag tgtcatgttt tttttggtcc
701 gtgaccgtcg tcctacagga tcccctcaag attttgggga agtttttaac
751 atgtttgaca atgaaccgag cacagcaacg gtgaagaaca tgcatcgtga
801 tcgttatcaa gttttacgga aatggcatgc gactgtgacg ggaggaacat
851 atgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat
901 tatgtagttt acaatcaaca agaggccggc aagtatgaga atcatacgga
951 aaatgcatta atgttgtata tggcatgtac tcatgcatca aatcctgtat
1001 atgctacttt gaaaatccgg atctatttct atgattcggt aacaaattaa
1051 taaatatcca gctttatatc atatgaagtt tgtacatcaa tcgtttgttc
1101 cattacatta tccaaaacat gataaactgc tcttattaca ttataaattc
1151 ctattacacc aagcatatcc aggtacctaa ggacctgggt tttgaagact
1201 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt
1251 tagaaaacac ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt
1301 gtatttgaat cttgatgatg tcgtgctgtg ttaggaaggg cctgctgtcg
1351 tgcttcaaaa ttttgaaata caggggattt cgaatttccc aggtatatac
1401 gccactctct gctcgatccg cagtgatgta ttcccctgtg cgtgaatccg
1451 tgatcatggc agttgatcga tatataatat gtacacccac agggaagatc
1501 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttt
1551 tcgcgaccgg aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt
1601 gattgcccac tgcttcagtg ctgcattctt ctcttcgtcc agatattcct
1651 tatagctgct gtttggacct ttattgcaca ggaagatagt gggaattcca
1701 cctttaatca tgactggctt tccgtacttc gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt
1801 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga
1851 tcaagatgtc cacacaagta attgtggggt cctaagcatc gagcccacat
1901 tgttttgccc gttctactat ccccctcaat gtctatgctt atgggcctaa
1951 aaggccgcgc agcggcacac acaacattga cactggccca atcgacaagt
2001 tctggaggaa ctctgtcgaa ggatgaaatt gaaaatggaa aaacgtaaac
2051 ctcaaaacga ggttggaaaa tgcgatccaa attgctaatt aaattatgaa
2101 actgcaaaac ataatccttt ggggctaatt ccttcaatac tttcaatgca
2151 tcttccttat tccccgtgtt aatcgcctta gcatatgcat cgttggccgt
2201 ctgctgacca ccacgagcag atcgtccatc gatctggaaa acaccccatt
2251 ctagaacgtc tccgtctttg tcgatgtatg ctttgacatc tgacgctgat
2301 ttagctccct gaatgttcgg atggaaatgt gctgaccgac ttggggaaac
2351 caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga
2401 tgagaacatg gatatgcgga gacccatcct cgtgcagctc tctacagatc
2451 ttgatgaatt tcttcgcagt tggggtttct agggtttgca attgggaaag
2501 tgcctcttct ttagttagag agcactttgg gtatgtgagg aaatagtttt
2551 tcgcatctat tctgaaacga cgtggcggag ccataaaact tgtcgttttg
2601 attcggcgtc cctcaacttc ctctatgtaa ttggcgtctg gcgtcccata
2651 tataggtagg acgctaaatg gcagaattgt aattttgaaa agaaaattac
2701 tttaattcaa aatcctcata gcggccattc gttaatatt