Sequence of DPV Chilli leaf curl Vellanad virus
Chilli Leaf curl Vellanad virus [India/Vellanad/2008] clone pChVelK52 segment DNA-A, complete sequence.
ACC No: HM007121
Dated: 2012-02-01 | Length: 2788 | CRC: -890212618
ID HM007121; SV 1; circular; genomic DNA; STD; VRL; 2788 BP.
XX
AC HM007121;
XX
DT 01-FEB-2012 (Rel. 111, Created)
DT 01-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE Chilli Leaf curl Vellanad virus [India/Vellanad/2008] clone pChVelK52
DE segment DNA-A, complete sequence.
XX
KW .
XX
OS Chilli Leaf curl Vellanad virus [India/Vellanad/2008]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2788
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
XX
RN [2]
RP 1-2788
RA Singh A.K., Vinothkumar R., Chattopadhyay B., Chakraborty S.;
RT ;
RL Submitted (17-MAR-2010) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Delhi, Delhi 110067, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2788
FT /organism="Chilli Leaf curl Vellanad virus
FT [India/Vellanad/2008]"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="India/Vellanad/Chilli/2008"
FT /mol_type="genomic DNA"
FT /country="India:Vellanad"
FT /collection_date="Nov-2008"
FT /clone="pChVelK52"
FT /db_xref="taxon:1000664"
FT gene 183. .530
FT /gene="AV2"
FT CDS 183. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /note="suppressor of RNAi"
FT /protein_id="AEA76856.1"
FT /translation="MWDPLVNDFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQSCCCPHCPRHKSKGMGQQAHES
FT EAQDVQDVQKP"
FT gene 343. .1113
FT /gene="AV1"
FT CDS 343. .1113
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="nucleoprotein; responsible for encapsidation of
FT viral DNA and insect transmission"
FT /protein_id="AEA76857.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKARAWA
FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVTHVGKVMCISDVTRGSGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDRPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVRKFVRVNNYVIYNQQEAGKYENH
FT QENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1110. .1514)
FT /gene="AC3"
FT CDS complement(1110. .1514)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /note="replicational enhancer protein; enhances viral
FT replication"
FT /protein_id="AEA76860.1"
FT /translation="MDSRTGERITAALATNGVYIWQVPNPLYFTILNHDSRPFNSTTDL
FT ISLRVQFNHNLRRVLGIHKCFLTFRIWTTLQPRTGHFLRVFKTQLLRYLDSLGVVSVNN
FT VIRGVDHVLWNVLTGTVSVQQFSEIKYNVY"
FT gene complement(1255. .1659)
FT /gene="AC2"
FT CDS complement(1255. .1659)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /note="transcriptional activator protein; transactivates
FT virion sense ORFs and suppressor of RNAi"
FT /protein_id="AEA76859.1"
FT /translation="MQSSSPSKAHSTQVPIKVLHRQYKKTNRRKRVDLECGCSYYLGID
FT CRNHGFTHRGTHHCSSGNEWRLYLAGPKSPIFHDPQPRQPAIQLDHRPHIITGAVQPQP
FT SESVGDTQMFSNLPNLDDLTASDWSFLKGL"
FT gene complement(1556. .2647)
FT /gene="AC1"
FT CDS complement(1556. .2647)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /note="replicase; responsible for viral replication"
FT /protein_id="AEA76858.1"
FT /translation="MPRANRFQVLAKNIFLTYPKCPIPKEQMLELLKGISCPSDKLFIR
FT ISQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPNTSSQFHPNFQGAKSSSDVKSYI
FT EKDGDYIDWGSFQVDGRSARGGQQTANDAAAEALNSGSADAALAIIREKLPKDFIFQYH
FT NLKTNLDRIFAPPREVFVCPFLSSSFDQVRDELDEWAAVNVVSAAARPNRPMSIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALRNWALKNAVFVTLQGPL
FT YSGTNKGSPQTIQEDQPEETGGP"
FT gene complement(2233. .2490)
FT /gene="AC4"
FT CDS complement(2233. .2490)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /note="involved in symptom expression and suppressor of
FT RNAi"
FT /protein_id="AEA76861.1"
FT /translation="MGLCISTPSSSSRVKPSSETPDISMSLTLTPHPNSIQTSRELSPP
FT PMSSPTSRRTEITSTGVVFRSMDDLLEEVSRQLMMLQQRP"
XX
SQ Sequence 2788 BP; 756 A; 578 C; 649 G; 805 T; 0 other;
hm007121 Length: 2788 01-FEB-2012 Type: N Check: 6985 ..
1 accggatggc cgcgcccatt tctgtcattg tcatgggacc cacgtgtgtc
51 ggctttggct tttgtctttt gcatgggccc caccactaac taatgttaac
101 caatcacagc cccccgtcaa agcttaatta ttgaagtggg cccctatata
151 aacttgggga cgaagtttca attttattca agatgtggga ccccctagtc
201 aatgattttc ctgaaactgt acatggtttc aggtgtatgc ttgcaataaa
251 atacttgcaa ttagtagaaa atacatactc accagatacc ttggggtacg
301 atttaattag ggatttaatc tcagttatta gggctagaaa ttatgtcgaa
351 gcgaccagca gatataatca tttccacgcc cgcctcgaag gtacgccgcc
401 gtctcaactt cgacagccca tattccagtc gtgctgctgc ccccattgtc
451 cgcgtcacaa aagcaagggc atgggccaac aggcccatga atcggaagcc
501 caggatgtac aggatgtaca gaagccctga tgttcccaaa ggatgtgaag
551 gcccatgtaa ggtccagtct tttgagtcca ggcatgacgt gacccacgta
601 gggaaggtta tgtgtattag tgatgttaca cgaggtagtg ggcttaccca
651 tagagtaggt aaacgttttt gtgtcaagtc agtgtatgtg ttaggtaaaa
701 tttggatgga tgaaaatatt aaaacgaaga accacactaa cagtgtgatg
751 ttcttccttg tccgtgatag aagacctgtg gatagacccc aggattttgg
801 agaggttttc aacatgtttg acaatgaacc cagtaccgca accgtgaaga
851 atgtacatcg tgatcgatat caagtattga ggaaatggca tgcaactgtt
901 accggaggtc agtacgcatc gaaggagcag gcattagtta ggaagtttgt
951 tagggttaat aattatgtaa tttataacca gcaggaagct ggtaagtatg
1001 agaatcatca ggagaatgcg ttaatgttgt atatggcatg tacgcatgcc
1051 tcaaaccccg tgtatgctac tttgaagata cggatctact tctacgattc
1101 agtatcaaat taataaacgt tatattttat ttcactgaat tgttgtacac
1151 ttacagtacc cgttagtaca ttccacaata catgatcaac tcccctaatt
1201 acattattaa cactaacaac tcctaaacta tctaaatatc gtagaagttg
1251 ggttttaaag acccttaaga aatgaccagt ccgaggctgt aaggtcgtcc
1301 aaattcggaa ggttagaaaa catttgtgta tccccaacac tctccgaagg
1351 ttgtggttga actgcacccg taatgatatg aggtctgtgg tcgagttgaa
1401 tggccggctg tcgtggttga ggatcgtgaa atatagggga tttgggacct
1451 gccagatata gacgccattc gttgccagag ctgcagtgat gcgttcccct
1501 gtgcgtgaat ccatgattcc tgcagtcgat acccaggtag tatgaacaac
1551 cacactcaag gtccacccgt ttcctccggt tggtcttctt gtattgtctg
1601 tggagaacct ttattggtac ctgagtagag tgggccttgg agggtgacga
1651 agactgcatt ctttagtgcc caattcctta gtgcggaatt tttgtcttcg
1701 tccaagaact ctttatagct ggaattgggc cctggattgc agaggaagat
1751 agtgggaatg ccccctttta tttgaactgg ctttccgtat tttgtgttgg
1801 actgccagtc cctttgggcc cccatgaatt ctttaaagtg ttttaggtag
1851 tgggggtcga cgtcatcaat gacgttatac caggcatcat ttgaatatat
1901 ttttgggctt aaatccaaat ggccacataa gtaattatgt ggacccaaag
1951 acctagccca cattgttttg ccggtccgac tatcaccctc taacacaata
2001 ctcatgggtc tattcggccg cgcagcggca ctgacaacat tcacggcagc
2051 ccattcgtca agttcatcac gaacttgatc aaaggaagaa cttaaaaaag
2101 gacaaacaaa aacctctctt ggaggtgcaa aaatcctatc taaattggtt
2151 ttcaaattat gatattgaaa aataaaatct ttagggagtt tctccctaat
2201 gattgccaga gcggcatcag cggagcctga atttagggcc tctgctgcag
2251 catcattagc tgtctgctga cctcctctag cagatcgtcc atcgacctga
2301 aaactacccc agtcgatgta atctccgtcc ttctcgatgt aggacttgac
2351 atcggaggag gacttagctc cctggaagtt tggatggaat tgggatgagg
2401 tgttagggtg agtgacatcg aaatgtctgg ggtttcggaa ctgggcttta
2451 cccttgaact ggatgagggc gtggatatgc agagacccat cttgatgttt
2501 ttcttgagaa atccggataa ataatttatc tgatgggcat gaaatgccct
2551 taagtagttc taacatttgt tccttaggta tggggcattt tgggtatgtt
2601 aagaaaatat ttttggctaa aacttgaaat ctgtttgcac gtggcatttt
2651 gtattggatg ctctacaaac tctgtgggaa ttggatgctt tggatgccta
2701 tatatatgaa gcttccaaat ggcataaacg taatttacgg gaaatttcca
2751 atctatttcc cgccaaaagc ggccatccgt ataatatt