Sequence of DPV Ageratum enation virus
Ageratum enation virus-Papaver somniferum isolate 2 segment DNA-A, complete sequence.
ACC No: HM149260
Dated: 2013-04-17 | Length: 2748 | CRC: 646309670
ID HM149260; SV 2; linear; genomic DNA; STD; VRL; 2748 BP.
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AC HM149260;
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DT 02-AUG-2010 (Rel. 105, Created)
DT 17-APR-2013 (Rel. 116, Last updated, Version 2)
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DE Ageratum enation virus-Papaver somniferum isolate 2 segment DNA-A, complete
DE sequence.
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KW .
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OS Ageratum enation virus-Papaver somniferum
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2748
RA Raj S.K., Srivastava A., Snehi S.K., Kumar S.;
RT "Ageratum enation virus associated with enations in Papaver somniferum in
RT India";
RL Unpublished.
XX
RN [2]
RP 1-2748
RA Raj S.K., Snehi S.K.;
RT ;
RL Submitted (26-APR-2010) to the INSDC.
RL Plant Molecular Virology Lab, National Botanical Research Institute, Rana
RL Pratap Marg, Lucknow, U.P. 226001, India
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RN [3]
RC Sequence update by submitter
RP 1-2748
RA Raj S.K., Snehi S.K.;
RT ;
RL Submitted (16-APR-2013) to the INSDC.
RL Plant Molecular Virology Lab, National Botanical Research Institute, Rana
RL Pratap Marg, Lucknow, U.P. 226001, India
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CC On Apr 16, 2013 this sequence version replaced gi:301341606.
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FH Key Location/Qualifiers
FH
FT source 1. .2748
FT /organism="Ageratum enation virus-Papaver somniferum"
FT /segment="DNA-A"
FT /host="Papaver somniferum"
FT /isolate="2"
FT /mol_type="genomic DNA"
FT /country="India:UP"
FT /collected_by="S. K. Snehi and Meenakshi Mahimamayi"
FT /collection_date="20-Feb-2010"
FT /identified_by="Dr. S. K. Raj"
FT /clone="SKS-P"
FT /db_xref="taxon:1322247"
FT gene 133. .480
FT /gene="AV2"
FT CDS 133. .480
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AGJ73649.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL
FT ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHVPRHQSKSMGEQAHEQ
FT KAQDVQDVQKS"
FT gene 293. .1066
FT /gene="AV1"
FT CDS 293. .1063
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="involved in virion encapsidation"
FT /db_xref="GOA:E2FHQ2"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E2FHQ2"
FT /protein_id="ADK73489.2"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPMSRVTKARAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKHHTNSVMFFLVRDRRPQDTPQDFGEVFQMFENEP
FT RHATVKKMYHDRYQVFRKWNSPVTGGQSPTKEQAIFRRFFMVNNYVVYNQPEAGKYKNH
FT TENALMLYMACTHASNPVYATFNIRIYFYDSTSN"
FT gene complement(1060. .1464)
FT /gene="AC3"
FT CDS complement(1060. .1464)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="REn; increases viral replication"
FT /db_xref="GOA:E2FHQ3"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E2FHQ3"
FT /protein_id="ADK73490.2"
FT /translation="MDSRTGELITAAHGMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDI
FT ITVQIRSNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFKYQVLKYLDRLGVICIKT
FT VGRAVEHVLNSVLTGTDSVNQSNLIKLKIY"
FT gene complement(1205. .1609)
FT /gene="AC2"
FT CDS complement(1205. .1609)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /note="TrAP; transcriptional activator for virus sense
FT genes"
FT /db_xref="GOA:E2FHQ4"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E2FHQ4"
FT /protein_id="ADK73491.2"
FT /translation="MRPSSPSTGHSTPMPIKVQHRLAKRAIRRRRVDLNCGCSYYVAID
FT CHNHGFTHRGTHHCSSWNEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQP
FT EESVGTTSMLDGFQNLDDLTASDLAFLEGF"
FT gene complement(1512. .2597)
FT /gene="AC1"
FT CDS complement(1512. .2597)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /note="Rep; involved in virus replication"
FT /db_xref="GOA:E2FHQ5"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:E2FHQ5"
FT /protein_id="ADK73492.2"
FT /translation="MAPPKRFQIYAKNFFLTYPHCSLTKEDALSQIQNLQTPVNKKYIK
FT ICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSIDVKSYI
FT DKDGDTLEWGEFQIDGRFARGGQQTANDAAAEALNAGSKEAAMAIIREKLPEKFIFQYH
FT NLNSNLDRIFSPPLEVYVSPFLSSSFDQVPEELEEWVSENVMVAAARPLRPQSIVIEGD
FT SRTGKTLWARSLGPHNYLCGHLDLSPRVYRNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPL
FT YSNADQGSAQASQEGHPATES"
FT gene complement(2183. .2440)
FT /gene="AC4"
FT CDS complement(2183. .2440)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AGJ73650.1"
FT /translation="MGNLIFTCLSSSKENTNAKITDSSTWYPQPDQHISIRTFRELNPA
FT STSSPTSTRTETPSNGENSRSMEDLHEEVNRQLMMLLQKP"
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SQ Sequence 2748 BP; 715 A; 595 C; 629 G; 809 T; 0 other;
hm149260 Length: 2748 17-APR-2013 Type: N Check: 2601 ..
1 accggatggc cgcgattttt ttaaagtggt cccctgacaa agacacgtcc
51 accaatctaa atcgtcgctc aaagcttaat tgttttgtgg tcccttattt
101 aaacttgctc accaagtagt gcactccgca ctatgtggga tccattagta
151 aacgagtttc ccgaaaccgt tcacggtttt agatgtatgt tagcagttaa
201 atatctgcag ttagtagaga agacttattc tcctgataca ttagggcacg
251 atttaattag ggatttaatt tcagtaatta gggctagaaa ttatgtcgaa
301 gcgaccagca gatataatca tttccacgcc cgcttcgaag gtacgccgcc
351 gtctcaactt cgacagccca tatgtgagcc gtgctgctgc ccccatgtcc
401 cgcgtcacca aagcaagagc atgggcgaac aggcccatga acagaaagcc
451 caggatgtac aggatgtaca gaagtcctga tgtccctaga ggatgtgaag
501 gcccatgtaa ggtccagtcg tttgagtcca gacatgacat tcagcatata
551 ggtaaagtca tgtgtgtcag tgatgttacg cgtggaactg ggctgactca
601 ccgagtgggt aaaaggtttt gtgttaaatc cgtttatgtc ttgggtaaga
651 tatggatgga cgaaaatatt aagaccaagc accatactaa cagtgtcatg
701 ttttttttgg tccgtgaccg tcgtcctcag gatacccctc aagattttgg
751 ggaggtgttc caaatgttcg aaaacgagcc ccgccacgct acggttaaaa
801 aaatgtacca tgatcggtac caggtgttca ggaagtggaa ttcccctgtc
851 actggtggtc agtctccaac caaagagcag gcaatattta ggcgtttttt
901 tatggttaat aactatgttg tgtataatca accagaagct ggtaagtaca
951 aaaaccatac ggaaaatgca ctgatgctgt acatggcatg tactcacgcc
1001 tctaaccccg tgtatgctac ttttaacata cggatctact tctacgattc
1051 cacatccaat taataaattt tcaattttat taaatttgac tggttcacac
1101 tgtcagtacc tgtgagtaca ctgttcaata catgctctac ggctctaccg
1151 acggttttta tacatattac tcctaaccta tcgaggtatt tgagtacttg
1201 gtacttaaaa accctcaaga aacgcaaggt ctgaggccgt aaggtcgtcc
1251 agattttgaa atccatccag cattgatgta gtcccaacgc tttcctcagg
1301 ttgtggttgg accgtatctg gacggttatt atgtcgtgtt ccatcaggaa
1351 cggccggctg ctgtggtcta tgatcttgaa atagagggga tttggaacct
1401 cccaggtata gacgccattc attccatgag ctgcagtgat gagttcccct
1451 gtgcgtgaat ccatggttgt ggcagtcaat tgctacgtag tacgagcacc
1501 cgcagttgag gtcaactctc cgtcgccgga tggccctctt ggctagcctg
1551 tgctgaacct tgatcggcat tggagtagag tggcccgtcg agggagatga
1601 aggtcgcatt tcttattgcc caagccttca atgccgtatt cttcggctcg
1651 tcaaggaact ctttatagct ggaattgggc ccaggattgc acaggaagat
1701 agtgggtatc ccacctttaa tttgaactgg ctttccgtat ttggtgttgc
1751 tttgccagtc cctctgggcc cccatgaatt ccttgaagtg ctttaggtag
1801 tggggatcta cgtcatcaat gacgttgtac cacgcgtcgt ttctgtagac
1851 tctaggactc aagtccagat ggccacatag gtaattatga ggccctaatg
1901 acctagccca caacgtttta cccgtacgac tgtcaccctc aattactata
1951 ctttgaggcc tcagaggccg cgcagcggca accatgacat tttctgagac
2001 ccattcttca agttcttcag gaacttgatc aaaagaagaa gataaaaaag
2051 gcgaaacata aacctccaac ggaggactga aaatcctatc taaattagaa
2101 tttaaattat gatattgaaa aataaatttt tctgggagtt tctcccttat
2151 tatagccatt gcagcttctt tagagcctgc atttagggct tctgcagcag
2201 catcattagc tgtctgttga cctcctcgtg caaatcttcc atcgatctgg
2251 aattctcccc attcgagggt gtctccgtcc ttgtcgatgt aggacttgac
2301 gtcgatgctg gatttagctc cctgaatgtt cggatggaaa tgtgctgatc
2351 tggttgggga taccaggtcg aagaatctgt tattttggca tttgtatttt
2401 ccttcgaact ggataagcac gtgaagatga ggttccccat tttcgtgaag
2451 ctctctgcag attttgatgt attttttgtt tactggggtt tgtaggtttt
2501 ggatttggga aagtgcgtct tctttagtaa gagagcaatg tggataagtg
2551 agaaagaaat ttttggcata tatttgaaat cgttttggag gagccattga
2601 cttggtcaat cggtactcag ctctagtctt atgtcaatcg gtgatcagta
2651 ctcaatatat agtgagtacc gaatggcatt attcgtaatt ctcaaaagaa
2701 attcaaaatt caaatttgaa atccaaaagc ggccatccgt ataatatt