Sequence of DPV Rice tungro bacilliform virus

Rice tungro bacilliform virus isolate Puducherry hypothetical protein gene, partial cds.

ACC No: HM149531

Dated: 2012-08-02 | Length: 1167 | CRC: 1559015925

                
ID   HM149531; SV 1; linear; genomic DNA; STD; VRL; 1167 BP.
XX
AC   HM149531;
XX
DT   10-OCT-2010 (Rel. 106, Created)
DT   02-AUG-2012 (Rel. 113, Last updated, Version 3)
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DE   Rice tungro bacilliform virus isolate Puducherry hypothetical protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Rice tungro bacilliform virus
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Tungrovirus.
XX
RN   [1]
RP   1-1167
RX   PUBMED; 22544477.
RA   Mangrauthia S.K., Malathi P., Agarwal S., Sailaja B., Singh J.,
RA   Ramkumar G., Krishnaveni D., Balachandran S.M.;
RT   "The molecular diversity and evolution of Rice tungro bacilliform virus
RT   from Indian perspective";
RL   Virus Genes 45(1):126-138(2012).
XX
RN   [2]
RP   1-1167
RA   Mangrauthia S.K., Brahma U., Malathi P., Biswal A.K., Krishnaveni D.,
RA   Balachandran S.M., Reddy C.S., Viraktamath B.C.;
RT   "Sequencing of ORFIV of Rice tungro bacilliform virus-Puducherry isolate";
RL   Unpublished.
XX
RN   [3]
RP   1-1167
RA   Mangrauthia S.K., Brahma U., Malathi P., Biswal A.K., Krishnaveni D.,
RA   Balachandran S.M., Reddy C.S., Viraktamath B.C.;
RT   ;
RL   Submitted (26-APR-2010) to the INSDC.
RL   Plant Pathology, Directorate of Rice Research, Rajendranagar, Hyderabad,
RL   A.P 500030, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1167
FT                   /organism="Rice tungro bacilliform virus"
FT                   /host="Oryza sativa"
FT                   /isolate="Puducherry"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collection_date="Jun-2009"
FT                   /db_xref="taxon:10654"
FT   CDS             <1. .1167
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORFIV; unknown function"
FT                   /db_xref="InterPro:IPR009347"
FT                   /db_xref="UniProtKB/TrEMBL:E2FHS3"
FT                   /protein_id="ADO14325.1"
FT                   /translation="INKECPYSIHHLGKNRVPIYNQGNLFHSEFTGRLSHLSNGLIDHL
FT                   FTFSNNTERVRKLHLISEHIYNKEFEIQTYSLECEKLREQVSHLKHTVETQRQQLREMR
FT                   DKLEGLREPLKKPIYTTQDKEALRNFFCKERSMEYIYHHIKRLARESYYAHLNKLQKDM
FT                   EFLRGFYLSFLTNVKFLVLFETGLWTTENIESHFFNNSSLFITQEEGERQVTKGLLEKN
FT                   SEDEAGRYILTSGFVSDLYAHGFIKQINFTNRLPEGIPLVIREKIMQHKFPGANTILIE
FT                   REIPKWDFDLMKRSTTFRTQIYILQGHRNFYGFSPIKSYEPIPPEEFGIEYYSWDQIYE
FT                   EDEADVVYQSISTRISKVVREYAWPCDDSDIMSCTTSMEEEYAHRLEA"
XX
SQ   Sequence 1167 BP; 431 A; 228 C; 222 G; 286 T; 0 other;

hm149531 Length: 1167  02-AUG-2012  Type: N  Check: 1896  ..

       1  atcaataaag agtgtccata ctcaatccac cacctcggta aaaaccgagt
      51  ccccatatat aatcagggaa acctgtttca cagtgaattt actggtaggc
     101  ttagccactt atcaaatggt cttatagacc acctttttac tttttctaat
     151  aatactgaga gagttaggaa gctccacctt atatcagagc atatctacaa
     201  taaagaattt gagatacaaa cctatagtct tgagtgtgaa aaattaagag
     251  agcaggttag ccatttaaaa catactgttg aaacacaaag acaacagtta
     301  agagagatga gagataaact agagggactg agagaaccac ttaaaaagcc
     351  catatacaca acccaagata aggaagcact tcgtaacttc ttttgcaaag
     401  aaagaagcat ggagtatatt taccaccaca taaaaaggtt agctcgcgag
     451  agctattacg cacatctgaa taaacttcag aaagatatgg aattcctcag
     501  gggattttat ttatctttct taacaaatgt caagtttcta gttctttttg
     551  agactggact ctggacaacc gaaaatattg aaagtcactt cttcaacaac
     601  agtagtctct tcataactca ggaagaagga gaaaggcagg tgacaaaagg
     651  attgctagaa aaaaacagtg aagatgaagc tggaagatac atcctgacat
     701  caggatttgt gtccgaccta tacgctcatg gattcataaa acagataaac
     751  ttcactaata gacttccaga aggcattcca ttagtcataa gagaaaaaat
     801  aatgcagcat aaattcccag gagcaaatac tatcctgatt gagagagaaa
     851  ttccaaaatg ggactttgat ctcatgaaga gaagcacaac attcagaact
     901  cagatctaca ttctacaagg tcatagaaac ttttatggat tttcacccat
     951  aaaatcctat gaacccatac ccccggaaga gttcggaata gaatattaca
    1001  gctgggacca gatctacgaa gaggatgaag cagacgtcgt ctatcaatca
    1051  ataagcacca gaatctctaa agttgtaagg gagtacgcgt ggccatgtga
    1101  tgacagtgac atcatgtcct gcaccacctc aatggaagaa gaatatgccc
    1151  acaggctgga ggcataa