Sequence of DPV Rice tungro bacilliform virus

Rice tungro bacilliform virus isolate Cuttack hypothetical protein gene, partial cds.

ACC No: HM149532

Dated: 2012-08-02 | Length: 1167 | CRC: 152551265

                
ID   HM149532; SV 1; linear; genomic DNA; STD; VRL; 1167 BP.
XX
AC   HM149532;
XX
DT   10-OCT-2010 (Rel. 106, Created)
DT   02-AUG-2012 (Rel. 113, Last updated, Version 3)
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DE   Rice tungro bacilliform virus isolate Cuttack hypothetical protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Rice tungro bacilliform virus
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Tungrovirus.
XX
RN   [1]
RP   1-1167
RX   PUBMED; 22544477.
RA   Mangrauthia S.K., Malathi P., Agarwal S., Sailaja B., Singh J.,
RA   Ramkumar G., Krishnaveni D., Balachandran S.M.;
RT   "The molecular diversity and evolution of Rice tungro bacilliform virus
RT   from Indian perspective";
RL   Virus Genes 45(1):126-138(2012).
XX
RN   [2]
RP   1-1167
RA   Mangrauthia S.K., Brahma U., Malathi P., Biswal A.K., Krishnaveni D.,
RA   Balachandran S.M., Reddy C.S., Viraktamath B.C.;
RT   "Cloning and Sequencing of ORF-IV of Rice tungro bacilliform virus";
RL   Unpublished.
XX
RN   [3]
RP   1-1167
RA   Mangrauthia S.K., Brahma U., Malathi P., Biswal A.K., Krishnaveni D.,
RA   Balachandran S.M., Reddy C.S., Viraktamath B.C.;
RT   ;
RL   Submitted (26-APR-2010) to the INSDC.
RL   Plant Pathology, Directorate of Rice Research, Rajendranagar, Hyderabad,
RL   A.P 500030, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1167
FT                   /organism="Rice tungro bacilliform virus"
FT                   /host="Oryza sativa"
FT                   /isolate="Cuttack"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collection_date="Aug-2009"
FT                   /db_xref="taxon:10654"
FT   CDS             <1. .1167
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORFIV; unknown function"
FT                   /db_xref="InterPro:IPR009347"
FT                   /db_xref="UniProtKB/TrEMBL:E2FHS4"
FT                   /protein_id="ADO14326.1"
FT                   /translation="INKECPYSIHHLGKNRVPIYKQGNLFHSEFTGRLSHLSNGLIDHL
FT                   FTFSDNTERVRKLHLISEHIYNKEFEIQTYSLECERLREQVSHLKNTVETQKQQLREMR
FT                   DKIEGLREPLKKPIYTTQDKEALRNFFCKERSMEYIYHHIKRLARESYYSHLNKLQKDM
FT                   EFLRGFYLSFLTNVKFLVLFETGLWTTENIESHFFNNSSLFITQEEGERQMTKGLLEKN
FT                   SEDEAGRYILTSGFVSDLYAHGFIKQINFTNKLPEGIPLVIREKVMQYKFPGANTILIE
FT                   REIPKWDFDLMKRSTTFRTQIYILQGHRNFYGFSPIKSYEPITPEEFGIEYYSWEQIYE
FT                   DDEADVVYQSISTRISKVVREYAWPCDDSDIMSCTTSMEEEYAHRLEA"
XX
SQ   Sequence 1167 BP; 431 A; 228 C; 222 G; 286 T; 0 other;

hm149532 Length: 1167  02-AUG-2012  Type: N  Check: 97  ..

       1  atcaataaag agtgcccata ctcaatccat cacctcggta aaaaccgagt
      51  ccccatatat aaacagggaa acctgttcca tagtgagttt actggtaggc
     101  ttagccactt atcaaacggt cttatagacc atctttttac attttcagat
     151  aatactgagc gagttaggaa gctccacctt atatcagagc atatctacaa
     201  taaagaattt gaaatacaga cctatagtct tgagtgtgaa agattaagag
     251  agcaggttag ccacctaaaa aatactgttg aaacacaaaa acaacagtta
     301  agagagatga gagataaaat cgagggactg agagaaccac tcaaaaagcc
     351  catatacaca acccaagata aggaagcact tcgtaacttc ttttgcaaag
     401  aaagaagtat ggagtacatt taccaccata taaagaggtt agctcgcgag
     451  agctattact cgcatctgaa taaacttcag aaagatatgg aattccttag
     501  gggattttat ttatctttct taacgaacgt caagtttcta gttctcttcg
     551  agactggact ctggacaacc gaaaatattg aaagtcactt tttcaacaat
     601  agcagtctct tcataaccca ggaagaagga gaaaggcaga tgacaaaagg
     651  attactagaa aagaacagtg aagatgaagc tggaagatac attctgacat
     701  caggatttgt gtctgactta tacgctcatg gattcataaa acagataaac
     751  ttcactaata aacttccaga aggcattcca ttagtcataa gagaaaaggt
     801  aatgcagtat aaattcccag gagcaaatac tatcttgatt gagagagaaa
     851  tccccaaatg ggactttgat ctcatgaaga gaagcacaac attcagaact
     901  cagatttaca ttcttcaagg acatagaaac ttttacggat tttcacccat
     951  aaaatcctat gaacccataa cccctgaaga gttcggaata gaatattaca
    1001  gctgggaaca gatctacgaa gatgacgaag cagacgtcgt ctatcaatca
    1051  ataagcacca gaatctctaa agttgtaagg gagtatgctt ggccatgtga
    1101  tgacagcgac atcatgtcct gcaccacctc aatggaagaa gaatatgccc
    1151  acaggctgga agcataa