Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak Uganda virus-[Malawi:Rumphi 27:2009] coat protein gene, partial cds.
ACC No: HM171299
Dated: 2011-03-23 | Length: 1101 | CRC: -1953952155
ID HM171299; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
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AC HM171299;
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DT 16-JAN-2011 (Rel. 107, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 4)
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DE Cassava brown streak Uganda virus-[Malawi:Rumphi 27:2009] coat protein
DE gene, partial cds.
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KW .
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OS Cassava brown streak Uganda virus-[Malawi:Rumphi 27:2009]
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus; unclassified Ipomovirus.
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RN [1]
RP 1-1101
RX PUBMED; 21169213.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT "Evolution of cassava brown streak disease-associated viruses";
RL J. Gen. Virol. 92(PT 4):974-987(2011).
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RN [2]
RP 1-1101
RA Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA Fauquet C.M.;
RT ;
RL Submitted (30-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL MO 63132, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1101
FT /organism="Cassava brown streak Uganda virus-[Malawi:Rumphi
FT 27:2009]"
FT /host="Manihot esculenta"
FT /isolate="MW:Rum27:09"
FT /mol_type="genomic RNA"
FT /country="Malawi:Rumphi Dist., Northern Malawi"
FT /collection_date="2009"
FT /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT rev_seq: ttcaatagcagcacctgcatagctatgc"
FT /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT ttcaattgcggcaccactgtaactgtgc"
FT /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT ttcgatagcggcacccgcgtagctgtgc"
FT /db_xref="taxon:980523"
FT CDS <1. .>1101
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:E7CIK5"
FT /protein_id="ADV16247.1"
FT /translation="ALNQEEIEAVITALKKLWKDNGPTRTRSPFEARRLRAPQVERVNE
FT LLQKLKDEGLQTKKRPCGEPDDGEVVDDESDDGNNQRPGKEVVDESQNNQQVDPRKPKF
FT KIRGDGSTIRRDDIDKIPTNALEIKKTFKPPRVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT YIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKN
FT EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALAAPGD
FT DNNVDRERHTTHDVSANRHSYSGAAIE"
XX
SQ Sequence 1101 BP; 377 A; 179 C; 278 G; 267 T; 0 other;
hm171299 Length: 1101 23-MAR-2011 Type: N Check: 8796 ..
1 gccttaaatc aggaggaaat agaagcagtg atcactgctt taaagaagct
51 ttggaaggat aatggaccaa caaggacgcg tagtccattt gaggctagga
101 gattgagagc cccacaagtt gagcgcgtaa atgagttact tcagaaacta
151 aaagatgaag ggttgcaaac aaagaagagg ccatgtggag aaccagatga
201 tggggaagtg gtggatgatg aaagtgatga tggaaataat cagagacctg
251 gaaaggaagt tgttgatgag agccagaata atcagcaagt tgatccaaga
301 aagccgaaat tcaagattag aggagatgga agtactatta gacgggatga
351 cattgataaa attccaacta atgctcttga gatcaagaag acattcaagc
401 ctccaagggt gtcacagtca gcttacattt ggataccacg ctctcaaagg
451 gataatctaa cccctgatgt aattcagaat ttcctggcat atatacctcc
501 atctcatgct atagataatc aacttgcttc aggaattgaa gttgagaatt
551 gggcaattga ggttgctaaa gcatatggag ttaatataca ggaattttat
601 cgcacggttc tgccagcttg gatagtgaac tgtatagtga acggaactag
651 cgatgaaagg aagaatgaga agtcatggcg agcagttgag ctgaattctc
701 aaggggaaga tgttgatgat tttgagtatc caatggagcc aatgtataaa
751 tttgcactgc caactatgag gaaggttatg agaaactttt ctagccaagc
801 tatcctcatg tatcagaata gtgttgctgc aggtaaggcg tttgtaataa
851 aagctgccag aaatgctgga tacacaagta ttgaaaataa atggctaggt
901 atagattttc ttgccgaagc tcaattgtcc caaagtcaac ttgatatcaa
951 gcatcagatt ctggcagcaa atgttggtag aacaaagaca aggttgtttg
1001 cattagcagc tcctggggat gacaacaatg tagatagaga aaggcacacg
1051 acacacgatg tcagtgcaaa caggcacagt tacagtggtg ccgcaattga
1101 a