Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak Uganda virus-[Malawi:Machinga 5:2009] coat protein gene, partial cds.
ACC No: HM171301
Dated: 2011-03-23 | Length: 1101 | CRC: -189844281
ID HM171301; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
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AC HM171301;
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DT 16-JAN-2011 (Rel. 107, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 4)
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DE Cassava brown streak Uganda virus-[Malawi:Machinga 5:2009] coat protein
DE gene, partial cds.
XX
KW .
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OS Cassava brown streak Uganda virus-[Malawi:Machinga 5:2009]
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus; unclassified Ipomovirus.
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RN [1]
RP 1-1101
RX PUBMED; 21169213.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT "Evolution of cassava brown streak disease-associated viruses";
RL J. Gen. Virol. 92(PT 4):974-987(2011).
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RN [2]
RP 1-1101
RA Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA Fauquet C.M.;
RT ;
RL Submitted (30-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL MO 63132, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1101
FT /organism="Cassava brown streak Uganda
FT virus-[Malawi:Machinga 5:2009]"
FT /host="Manihot esculenta cv. Mbundumali"
FT /isolate="MW:Mac5:09"
FT /mol_type="genomic RNA"
FT /country="Malawi:Machinga Dist., Southern Malawi"
FT /collection_date="2009"
FT /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT rev_seq: ttcaatagcagcacctgcatagctatgc"
FT /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT ttcaattgcggcaccactgtaactgtgc"
FT /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT ttcgatagcggcacccgcgtagctgtgc"
FT /db_xref="taxon:980525"
FT CDS <1. .>1101
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:E7CIK7"
FT /protein_id="ADV16249.1"
FT /translation="ALNQEEIEAEITALKKLWRDNGPTRTRSPFEARRLRAPQVERVNE
FT LLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQVDPRKPEF
FT KIRGDGSNIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT YIPPSHAIDNQLASGIEVENWAIKVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKN
FT EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVSRTRTRLFALAAPGD
FT DNNVDKERHTTHDVSATRHSYSGAAIE"
XX
SQ Sequence 1101 BP; 380 A; 177 C; 273 G; 271 T; 0 other;
hm171301 Length: 1101 23-MAR-2011 Type: N Check: 255 ..
1 gccttaaatc aggaggaaat agaagcagaa atcactgctt tgaagaagct
51 ttggagagat aatggaccaa caaggacgcg tagtccattt gaggctagga
101 gattgagagc cccacaggtt gagcgcgtca atgagttact ccaaaaacta
151 aaagatgaag gattgcaaac aaagaagagg ccatgtggag aaccagatga
201 tggagaagtg gtagatgatg atagtgatga tggaaataat cagagatctg
251 gaaaagaggt tgttgatgag agccagaaca atcagcaagt tgatccaagg
301 aagccggaat tcaagattag aggagatgga agtaatatta gacgggatga
351 cattgataaa attccaacta atgctcttga gatcaagaag acattcaagc
401 ctccaaaggt gtcacagtcg gcttacattt ggattccacg ctctcaaagg
451 gataatctaa cccctgatgt aattcagaat tttctggcgt atatacctcc
501 atctcatgct atagataacc aacttgcttc aggaattgaa gttgaaaatt
551 gggcaattaa ggttgctaaa gcatatgggg ttaatataca ggaattttat
601 cgcacagtct tgccagcttg gatagtgaac tgcatagtga atggaactag
651 tgatgaaagg aagaatgaaa agtcatggcg agcagttgag ttgaactctc
701 agggggaaga tgttgatgat tttgagtatc caatggagcc aatgtataaa
751 tttgcattgc caactatgag gaaggttatg agaaacttct ctagccaagc
801 aatcctcatg tatcagaata gtgttgctgc aggtaaggcg tttgtaataa
851 aagctgctag aaatgctgga tacacaagta ttgaaaacaa atggcttggt
901 atagattttc ttgccgaagc tcaattgtcc caaagtcaac ttgatatcaa
951 gcatcaaatt ctagcagcaa atgttagtag aacaaggaca aggctgtttg
1001 cattagcagc tcctggagat gataataatg tggataaaga aaggcacacg
1051 acacatgatg tcagtgcaac taggcacagt tacagtggtg ccgcaattga
1101 a