Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak Uganda virus-[Malawi:Machinga 6:2009] coat protein gene, partial cds.
ACC No: HM171302
Dated: 2011-03-23 | Length: 1098 | CRC: -1362648900
ID HM171302; SV 1; linear; genomic RNA; STD; VRL; 1098 BP.
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AC HM171302;
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DT 16-JAN-2011 (Rel. 107, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 4)
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DE Cassava brown streak Uganda virus-[Malawi:Machinga 6:2009] coat protein
DE gene, partial cds.
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KW .
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OS Cassava brown streak Uganda virus-[Malawi:Machinga 6:2009]
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus; unclassified Ipomovirus.
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RN [1]
RP 1-1098
RX PUBMED; 21169213.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT "Evolution of cassava brown streak disease-associated viruses";
RL J. Gen. Virol. 92(PT 4):974-987(2011).
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RN [2]
RP 1-1098
RA Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA Fauquet C.M.;
RT ;
RL Submitted (30-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL MO 63132, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1098
FT /organism="Cassava brown streak Uganda
FT virus-[Malawi:Machinga 6:2009]"
FT /host="Manihot esculenta cv. Matenje"
FT /isolate="MW:Mac6:09"
FT /mol_type="genomic RNA"
FT /country="Malawi:Machinga Dist., Southern Malawi"
FT /collection_date="2009"
FT /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT rev_seq: ttcaatagcagcacctgcatagctatgc"
FT /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT ttcaattgcggcaccactgtaactgtgc"
FT /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT ttcgatagcggcacccgcgtagctgtgc"
FT /db_xref="taxon:980526"
FT CDS <1. .>1098
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:E7CIK8"
FT /protein_id="ADV16250.1"
FT /translation="ALNQEEIEAEITALKKLWEDNGPTNMRSPFEARRLRAPQVERVNE
FT LLQKLKNEGLQTKKRPCGEPDDGEVVDDDSDDGNYQNYGKKVDDSQNNQQVDPRKLKFK
FT TRGDGSDIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRNNLTPGVIQNFLAY
FT IPPSHAIDNQLASGIEVENWAIKVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKNE
FT KSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNSVAAGKAFV
FT IKAARNAGYTSIENKWLGIDFLAEAQLSQNQLDIKHQILAANVGRTKTRLFALAAPGDD
FT NNVDKERHTTHDVSANRQSYSGAAIE"
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SQ Sequence 1098 BP; 381 A; 175 C; 269 G; 273 T; 0 other;
hm171302 Length: 1098 23-MAR-2011 Type: N Check: 4897 ..
1 gccttaaatc aggaggaaat agaagcagag atcactgcct taaagaagct
51 atgggaagac aatggaccga caaacatgcg tagtccattt gaagctagga
101 gattaagagc cccacaagtt gagcgtgtga atgagttgct tcagaaactg
151 aagaatgaag gattgcaaac gaagaagagg ccatgtggag aaccagatga
201 tggagaagtg gtggatgatg atagtgatga tggtaattat cagaattatg
251 gaaagaaagt tgatgatagt caaaataatc agcaagttga tccaagaaag
301 ctgaaattca agactagagg agatggaagt gacattagac gggatgacat
351 tgataaaatt ccaactaatg ctcttgagat caagaagaca tttaagcctc
401 caaaggtgtc acagtcagct tacatttgga ttccgcgctc tcaaaggaat
451 aatctaaccc ctggtgtaat ccagaatttc ttggcatata tacctccatc
501 tcatgctata gataaccaac ttgcttcagg aattgaagtt gagaattggg
551 caattaaggt tgctaaagca tatggagtta atatacagga attttatcgc
601 acagttttgc cggcctggat agtgaactgt atagtgaacg gaactagcga
651 tgaaaggaaa aatgagaagt catggcgagc agttgagctc aattctcagg
701 gggaagatgt tgatgacttc gagtatccaa tggagccaat gtataaattt
751 gcattgccaa ccatgaggaa gattatgaga aatttctcta gccaagctat
801 cctcatgtat cagaatagtg ttgctgcagg taaggcgttt gtaataaaag
851 ctgctagaaa tgctgggtat acaagtattg agaataaatg gctaggtata
901 gattttcttg ccgaagctca attatctcaa aatcaacttg atatcaagca
951 tcagattttg gcagcaaatg ttggtagaac aaagacaagg ctgtttgcat
1001 tagcagctcc tggggatgat aacaatgttg ataaagaaag gcacacgaca
1051 cacgatgtca gtgcaaacag gcaaagttac agtggtgccg caattgaa