Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak Uganda virus-[Malawi:Salima 60:2009] coat protein gene, partial cds.
ACC No: HM171306
Dated: 2011-03-23 | Length: 1098 | CRC: 1053395511
ID HM171306; SV 1; linear; genomic RNA; STD; VRL; 1098 BP.
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AC HM171306;
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DT 16-JAN-2011 (Rel. 107, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 4)
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DE Cassava brown streak Uganda virus-[Malawi:Salima 60:2009] coat protein
DE gene, partial cds.
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KW .
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OS Cassava brown streak Uganda virus-[Malawi:Salima 60:2009]
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus; unclassified Ipomovirus.
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RN [1]
RP 1-1098
RX PUBMED; 21169213.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT "Evolution of cassava brown streak disease-associated viruses";
RL J. Gen. Virol. 92(PT 4):974-987(2011).
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RN [2]
RP 1-1098
RA Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA Fauquet C.M.;
RT ;
RL Submitted (30-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL MO 63132, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1098
FT /organism="Cassava brown streak Uganda virus-[Malawi:Salima
FT 60:2009]"
FT /host="Manihot esculenta cv. Chowawa"
FT /isolate="MW:Sal60:09"
FT /mol_type="genomic RNA"
FT /country="Malawi:Salima Dist., Central Malawi"
FT /collection_date="2009"
FT /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT rev_seq: ttcaatagcagcacctgcatagctatgc"
FT /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT ttcaattgcggcaccactgtaactgtgc"
FT /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT ttcgatagcggcacccgcgtagctgtgc"
FT /db_xref="taxon:980530"
FT CDS <1. .>1098
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:E7CIL2"
FT /protein_id="ADV16254.1"
FT /translation="ALNQEEIEAEIAALKKLWKDNGPTRTRSPFEARRLRAPQVERVNE
FT LLQKLKDEGLQTKKRPCGEPDDGESVDDDSDDGDNQNSGKKVDDSQSNQQVDPRKPKFK
FT IRGDGSTIRRDDIDKIPTNALEIKKTFKPPRVSQSAYIWIPRSQRDNLTPDVIQNFLAY
FT IPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKNE
FT KSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAFV
FT IKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILTANVGRTKTRLFALAAPGDD
FT NNVDKERHTTHDVSANRHSYSGAAIE"
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SQ Sequence 1098 BP; 373 A; 179 C; 274 G; 272 T; 0 other;
hm171306 Length: 1098 23-MAR-2011 Type: N Check: 5243 ..
1 gccttaaatc aggaggaaat agaagcagag atcgctgctt taaagaagct
51 gtggaaagac aatggaccga caagaacgcg tagtccattt gaagctagga
101 gattgagagc accgcaagtt gagcgcgtga atgagttact tcagaaatta
151 aaagatgaag gattgcaaac aaagaagagg ccatgtggag aaccagatga
201 cggggaatct gtagatgatg acagtgatga tggtgataat cagaattctg
251 gaaagaaagt tgatgatagt cagagtaatc agcaagttga tccaagaaag
301 ccaaaattta aaattagagg agatggaagt accattagac gggatgatat
351 tgataaaatt ccaactaatg ctcttgagat caagaagaca tttaagcctc
401 caagggtgtc acagtcagct tacatttgga ttccgcgctc tcaaagggat
451 aacctaaccc ctgatgtcat tcagaatttt ctggcgtata tacctccgtc
501 tcatgctata gacaaccaac ttgcctcagg aattgaagtt gagaattggg
551 caattgaggt tgctaaagca tatggagtca atatacagga attttatcgc
601 acagttttgc cagcttggat agtgaattgt atagttaatg gaactagcga
651 tgaaaggaaa aatgagaagt catggcgagc agttgagctg aattctcagg
701 gggaagatgt tgatgatttc gagtatccaa tggagccaat gtataaattt
751 gcattgccaa ccatgaggaa ggttatgaga aacttctcta gccaagctat
801 cctcatgtac cagaatagtg ttgctgcagg taaggcgttt gtaataaaag
851 ctgctaggaa tgctgggtat acaagtattg agaataaatg gctaggtata
901 gattttcttg ccgaagctca attatctcag agtcaacttg atatcaagca
951 tcagattctg acagcgaatg ttggtagaac aaagacaagg ctgtttgcat
1001 tagcagctcc tggagatgat aacaatgttg ataaagaaag gcacacgaca
1051 cacgatgtca gtgcaaacag gcacagttac agtggtgccg caattgaa