Sequence of DPV Cassava brown streak virus
Cassava brown streak virus-[Uganda:Wakiso 33:2009] coat protein gene, partial cds.
ACC No: HM171312
Dated: 2011-03-23 | Length: 1134 | CRC: 568058955
ID HM171312; SV 1; linear; genomic RNA; STD; VRL; 1134 BP.
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AC HM171312;
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DT 16-JAN-2011 (Rel. 107, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 4)
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DE Cassava brown streak virus-[Uganda:Wakiso 33:2009] coat protein gene,
DE partial cds.
XX
KW .
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OS Cassava brown streak virus-[Uganda:Wakiso 33:2009]
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-1134
RX PUBMED; 21169213.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT "Evolution of cassava brown streak disease-associated viruses";
RL J. Gen. Virol. 92(PT 4):974-987(2011).
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RN [2]
RP 1-1134
RA Bagewadi B., Yadav J.S., Patil B.L., Alicai T., Ogwok E., Fauquet C.M.;
RT ;
RL Submitted (30-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL MO 63132, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1134
FT /organism="Cassava brown streak virus-[Uganda:Wakiso
FT 33:2009]"
FT /host="Manihot esculenta"
FT /isolate="UG:Wak33:09"
FT /mol_type="genomic RNA"
FT /country="Uganda:Wakiso District"
FT /collection_date="Sep-2009"
FT /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT rev_seq: ttcaatagcagcacctgcatagctatgc"
FT /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT ttcaattgcggcaccactgtaactgtgc"
FT /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT ttcgatagcggcacccgcgtagctgtgc"
FT /db_xref="taxon:980542"
FT CDS <1. .>1134
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:E7CIL8"
FT /protein_id="ADV16260.1"
FT /translation="AIDKDEIEAEITKLKEMWRNNKPTRTRSPFESKRLRAPQVARVNE
FT LLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQQTNKGKAPMESPTERNQSEKPIG
FT EEEEKHKKTRFRIRAGGGSEKRDDIDKIPTNALEFRKNFKPPKVSQAAYVWIPRSQRDN
FT LTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTILPAWIVNC
FT IVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAILM
FT YQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRSK
FT TKLFALAAPGDDNNVDKERHTTRDVSATRHSYAGAAIE"
XX
SQ Sequence 1134 BP; 402 A; 193 C; 278 G; 261 T; 0 other;
hm171312 Length: 1134 23-MAR-2011 Type: N Check: 4221 ..
1 gcaattgaca aggatgagat tgaagctgag ataacgaaat taaaggaaat
51 gtggaggaac aacaagccaa ctagaactcg aagtccgttt gaatcaaaga
101 ggcttcgtgc tcctcaagtg gcccgtgtga atgaactgct taaacaactg
151 aaagatgctg gaatacaaac aagtaagagg ccatgtggag aacctgatga
201 aggagaagtt gctagcccag agtcaagtga agatgaggaa caacaaacaa
251 acaaaggaaa agcgcctatg gaatcaccta ctgaacggaa tcaatcagag
301 aaacctatag gtgaggagga ggagaagcat aaaaagacaa ggttcagaat
351 aagagctggt ggtggaagtg aaaagagaga tgatatagat aagattccaa
401 ccaacgctct agaatttcgg aaaaacttca aaccaccaaa agtgtcacaa
451 gcggcatatg tgtggatacc acgttcgcaa agagacaatt tgacacctga
501 tgtcatacag aactttctag cgtacgtgcc gccatcacat gctatagaca
551 atcaattggc ttccggagtt gaagttgaga attgggccat cgaagtttca
601 aaagcttatg gagtcaccat tcaagagttt tatagaacga tcctacctgc
651 ttggatcgtc aattgtattg tgaatgggac cagtgatgaa aggaagaatg
701 agaaatcgtg gagagctgtt gagttaaatg cacagggcga ggatattgat
751 gattcagaat accctatgga accaatgtac aaatttgctc tcccgacaat
801 gaggaaaata atgagaaatt tttccagcca agcaattcta atgtatcaga
851 atagtgtgac tgctggaaaa gcttttgtga taaaagcagc ccgaaatgct
901 gggtatacaa gcattgaaaa caagtggttg ggtattgact tcctagctga
951 agcacaattg tcacaaagcc aacttgatat caaacatcaa atattggctg
1001 ctaatgttgg tagaagtaaa actaagttgt ttgctttagc tgctcctggt
1051 gatgataata atgtggataa agaaaggcac actacgcggg atgttagtgc
1101 aactaggcat agctatgcag gtgctgctat tgaa