Sequence of DPV Rhynchosia golden mosaic Havana virus
Rhynchosia golden mosaic Havana virus-[Cuba:Havana:28:2007] segment DNA-A, complete sequence.
ACC No: HM236368
Dated: 2010-11-19 | Length: 2609 | CRC: -1014068864
ID HM236368; SV 1; circular; genomic DNA; STD; VRL; 2609 BP.
XX
AC HM236368;
XX
DT 29-SEP-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 2)
XX
DE Rhynchosia golden mosaic Havana virus-[Cuba:Havana:28:2007] segment DNA-A,
DE complete sequence.
XX
KW .
XX
OS Rhynchosia golden mosaic Havana virus-[Cuba:Havana:28:2007]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2609
RX PUBMED; 20852903.
RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.;
RT "Two novel begomoviruses belonging to different lineages infecting
RT Rhynchosia minima";
RL Arch. Virol. 155(12):2053-2058(2010).
XX
RN [2]
RP 1-2609
RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.;
RT ;
RL Submitted (17-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL Departamento de Proteccion de Plantas, Centro Nacional de Sanidad
RL Agropecuaria, Carretera de Tapaste km 3 1/2, San Jose de Las Lajas, La
RL Habana 32 700, Cuba
XX
FH Key Location/Qualifiers
FH
FT source 1. .2609
FT /organism="Rhynchosia golden mosaic Havana
FT virus-[Cuba:Havana:28:2007]"
FT /segment="DNA-A"
FT /host="Rhynchosia minima"
FT /isolate="28"
FT /mol_type="genomic DNA"
FT /country="Cuba:Havana"
FT /collected_by="E. Fiallo-Olive"
FT /collection_date="2007"
FT /clone="28H"
FT /db_xref="taxon:889202"
FT gene 198. .947
FT /gene="AV1"
FT CDS 198. .947
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="UniProtKB/TrEMBL:E2G6Y4"
FT /protein_id="ADN84038.1"
FT /translation="MPKRDGSWRSMAGTSKVSRNANYSPRSGPTSNRANAWVNRPMYRK
FT PRIYRMYRSPDVPKGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRFCV
FT KSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKN
FT DLRDRFQVMHKFYSKVTGGQYASNEQAIVKRFWKVNNNVVYNHQEAAKYENHTENALLL
FT YMACTHASNPVYATLKIRIYFYDSIMN"
FT gene complement(944. .1342)
FT /gene="AC3"
FT CDS complement(944. .1342)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancement protein"
FT /db_xref="UniProtKB/TrEMBL:E2G6Y5"
FT /protein_id="ADN84039.1"
FT /translation="MDSRTGEPITAVQATSGVYIWEVPNPLYFKIIEVEKPIFTHTTVF
FT HLQIRANHNLRKALALHKAYFNFQVWTTLTTASGQIYLSRFKFLVMQFLDNLGVISINN
FT VIRAVSYATNKSYVNDVLENHIIKFKIY"
FT gene complement(1089. .1505)
FT /gene="AC2"
FT CDS complement(1089. .1505)
FT /codon_start=1
FT /gene="AC2"
FT /product="transactivator protein"
FT /db_xref="UniProtKB/TrEMBL:E2G6Y6"
FT /protein_id="ADN84040.1"
FT /translation="MTGQRKTPSSSPLKNLSSPPQIKPRHRYAKKQVRRRRIDLQCGCS
FT IYIHINCRNNGFTHRGTHHCSSSNEWRLYLGGSKSPVFQDNRSRETNIHTHDGVPLTNQ
FT SQPQPEESVGSPQSLLQFPSLDDFDDSIWADLFK"
FT gene complement(1390. .2475)
FT /gene="AC1"
FT CDS complement(1390. .2475)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /db_xref="UniProtKB/TrEMBL:E2G6Y7"
FT /protein_id="ADN84041.1"
FT /translation="MPLQRRFRLNAKNFFLTYPKCSISKEEALGQLLSIPTPVNKKFIK
FT ICKELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSTTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLQWGEFQIDGRSARGGQQTANDSYAKALNAESAEQALQIIKEHQPQHFVLQYH
FT NLVSNITKIFHKPPEPWVPPFQLSTFNNVPAIMSEWVNVNISDAAARPLRPISIIVEGP
FT SRTGKTIWARSMGPHNYLCGHIDLNPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNCKYGKPIQIKGGIPTIFLCNPGPHSSYKEFLGEEKNTSLHDWAKKNAIFVSIEEPL
FT FTTTNQTAAQIREKTSETKKD"
FT gene complement(2061. .2318)
FT /gene="AC4"
FT CDS complement(2061. .2318)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="UniProtKB/TrEMBL:E2G6Y8"
FT /protein_id="ADN84042.1"
FT /translation="MGNLIFTCSSSSKANTSARITDSSTWYPQPGQHISIQTYRELNQA
FT QTSSPTSTRMEIHFNGESFKSTAGLLEEDNKLRTTHMQRR"
XX
SQ Sequence 2609 BP; 678 A; 489 C; 602 G; 840 T; 0 other;
hm236368 Length: 2609 19-NOV-2010 Type: N Check: 7139 ..
1 accggatggc cgaccagcgt attggtgtat gccgtactgc acgtgttgct
51 ttattttgaa ttaaagatta aagtggtgcg ttgtccaatc atatgcgcac
101 ttgtgagtct agttatttgt gttcaaactt agtggccaag tttgctttca
151 tttaaatacg atccagctta cgtggatcga acatgcttta attcaaaatg
201 cctaagcgcg atggctcttg gcgttctatg gcggggacct ccaaggtgag
251 ccgcaatgct aattactctc cacgttctgg cccaacgtct aacagggcca
301 atgcttgggt taacaggccc atgtatagga agcccagaat ttataggatg
351 tacagatccc ctgatgttcc taagggttgt gaagggccct gtaaaattca
401 atcatttgaa cagcgacatg atatttctca tactggtaag gttatgtgta
451 tatccgacgt cacacgtggt aatggtatta cccatcgtgt tggaaaacga
501 ttttgtgtga aatctgtgta catattaggt aaggtatgga tggacgacaa
551 catcaagtta aagaaccata ccaacagcgt catgttttgg ttggttaggg
601 atagaagacc gtatggaact cctatggatt ttggacaagt ttttaatatg
651 ttcgacaatg aacctagtac agcaactgtt aagaatgatt tgcgtgatcg
701 ttttcaagtt atgcacaagt tttactccaa agttacaggt ggacaatatg
751 caagtaatga acaggcaatt gttaagcggt tttggaaggt gaataacaat
801 gtcgtctata atcaccagga agcagcaaag tacgagaacc atactgagaa
851 tgcgttatta ttgtatatgg catgtactca tgcttcgaat cctgtgtatg
901 caactcttaa aattcggatc tatttttatg attcgataat gaattaataa
951 atcttgaatt ttattatatg attttccagt acatcgttga cataactttt
1001 gttcgtcgca taggaaacag ctctaattac attattaatt gaaataacac
1051 ctaaattgtc taagaactgc attacaagaa acttgaatct acttaaataa
1101 atctgcccag atgctgtcgt caaagtcgtc caaacttgga aattgaagta
1151 agctttgtgg agagccaacg ctttcctcag gttgtggttg gctctgattt
1201 gtaagtggaa caccgtcgtg tgtgtgaata ttggtttctc tacttcgatt
1251 atcttgaaat acaggggatt tggaacctcc caaatataaa cgccactcgt
1301 tgcttgaact gcagtgatgg gttcccctgt gcgtgaatcc attgttcctg
1351 cagttaatat gaatataaat agaacagccg cactgcagat caatccttct
1401 tcgtctcact tgttttttcg cgtatctgtg ccgcggtttg atttgtggtg
1451 gtgaagagag gttcttcaat ggagacgaag atggcgtttt tctttgccca
1501 gtcatggagt gatgtgtttt tttcttcgcc gaggaactcc ttatatgatg
1551 aatgggggcc tggattgcaa aggaagatag tgggaattcc acctttaatt
1601 tgaattggct ttccgtattt gcagtttgat tgccaatccc tttgtgcccc
1651 catgaactct ttaaagtgct ttagataatg cggatcaacg tcatcgataa
1701 cgttgtacca tgcatcattg gagtatatct tcggattgag atcgatatga
1751 ccacatagat aattgtgagg gcccatgctt cgggcccata ttgttttgcc
1801 cgtccttgat ggtccttcaa caataattga tataggtctc aatggccgcg
1851 cagcggcatc ggaaatatta acgttaaccc attccgacat tatcgccggg
1901 acattattga atgtggacaa ttgaaatgga ggaacccatg gttccggtgg
1951 tttatgaaat attttcgtta tgttggacac caggttatgg tattggagga
2001 caaaatgttg tggttgatgc tctttgataa tctgcagagc ctgttctgca
2051 gattctgcat ttaacgcctt tgcatatgag tcgttcgcag tttgttgtcc
2101 tcctctagca gacctgccgt cgatttgaaa ctctccccat tgaagtgtat
2151 ctccatcctt gtcgatgtag gacttgacgt ctgagcttga tttagctccc
2201 tgtatgtttg gatggaaatg tgctgacctg gttgtggata ccaggtcgaa
2251 gaatctgtta ttcgtgcact ggtatttgcc ttcgaactgg atgagcacgt
2301 gaagatgagg ttccccattt tcatgaagtt ctttgcaaat cttgatgaac
2351 ttcttgttta cgggagtcgg aatggacaat agctgaccta gggcttcttc
2401 ttttgagatg gagcatttgg ggtatgtgag gaagaagttc ttggcattta
2451 agcgaaatcg cctctgtaat ggcatttctg taataagaag ggtgtacccc
2501 gattgaggct ctcaacactg gctcattata ttggtgtatt ggggtgcaat
2551 atatagtata ccttctattc gttatctgct tacacgtgga ggccatccgt
2601 tataatatt