Sequence of DPV Potato virus Y

Potato virus Y isolate KER.SO.O polyprotein gene, partial cds; and 3' UTR.

ACC No: HM243483

Dated: 2011-06-21 | Length: 1133 | CRC: 1163865875

                
ID   HM243483; SV 1; linear; genomic RNA; STD; VRL; 1133 BP.
XX
AC   HM243483;
XX
DT   29-DEC-2010 (Rel. 107, Created)
DT   21-JUN-2011 (Rel. 109, Last updated, Version 3)
XX
DE   Potato virus Y isolate KER.SO.O polyprotein gene, partial cds; and 3' UTR.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1133
RX   DOI; 10.1007/s11262-010-0546-8.
RX   PUBMED; 21082231.
RA   Hosseini A., Massumi H., Heydarnejad J., Hosseini Pour A., Varsani A.;
RT   "Characterisation of potato virus Y isolates from Iran";
RL   Virus Genes 42(1):128-140(2011).
XX
RN   [2]
RP   1-1133
RA   Massumi H., Hosseini A., Heydarnejad J., Hosseini Pour A.;
RT   ;
RL   Submitted (19-MAY-2010) to the INSDC.
RL   Department of Plant Protection, Shahid Bahonar University of Kerman,
RL   Kerman, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1133
FT                   /organism="Potato virus Y"
FT                   /host="potato"
FT                   /isolate="KER.SO.O"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /note="isolated between Jan-2005 and Jul-2007"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .804
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:E7CN47"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CN47"
FT                   /protein_id="ADU17170.1"
FT                   /translation="ANDTIDAGGSSKKDARPEQGSIQSNPNKGKDKDVNAGTSGTHTVP
FT                   RIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVRMAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPNVNGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLIRNLRDVGLARYASDLGQITSRTPVRAREAHIQMKA
FT                   AALKLAQPRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 1133 BP; 347 A; 215 C; 282 G; 289 T; 0 other;

hm243483 Length: 1133  21-JUN-2011  Type: N  Check: 4126  ..

       1  gcaaatgaca caatcgatgc aggaggaagc agcaagaaag atgcaagacc
      51  agagcaaggc agcatccagt caaacccgaa caaaggaaaa gataaggatg
     101  tgaatgctgg tacatctggg acacatactg tgccgagaat caaggctatc
     151  acgtccaaaa tgagaatgcc caaaagcaag ggagcaaccg tgctaaactt
     201  agaacacttg cttgagtatg ctccacaaca aattgatatt tcaaatactc
     251  gggcaactca atcacagttt gatacgtggt atgaggcagt gcggatggca
     301  tacgacatag gagaaactga gatgccaact gtgatgaatg ggcttatggt
     351  ttggtgcatt gaaaatggga cctcgccaaa tgtcaacgga gtttgggtta
     401  tgatggatgg ggatgaacaa gtcgagtacc cgttgaaacc aatcgttgag
     451  aatgcaaaac caacccttag gcaaatcatg gcacatttct cagatgttgc
     501  agaagcgtat atagaaatgc gcaacaaaaa ggaaccgtat atgccacgat
     551  atggtttaat tcgaaatctg cgggatgtgg gtcttgcgcg ttatgcctcg
     601  gacctaggtc aaatcacatc acgaacacca gtgagggcta gggaagcgca
     651  cattcaaatg aaggccgcag cattgaaatt agcccaacct cgacttttcg
     701  ggttggacgg tggcatcagt acacaagagg agaacacaga gaggcacacc
     751  accgaggatg tctctccaag tatgcatact ctacttggag tcaagaacat
     801  gtgatgtagt gtctctccgg acgatatata agtatttaca tatgcagtaa
     851  gtattttggc ttttcctgta ctacttttat cataattaat aatcagtttg
     901  aatattacta atagatagag gtggcagggt gatttcgtca ttgtggtgac
     951  tctatctttt aattccgcat tattaagtct tagataaaag tgccgggttg
    1001  tcgttgttgt ggatgactca tcgattaggt gatgttgcga ttctgtcgta
    1051  gcagtgacta tatctggatc tatctgcttg ggtggtgttg tgatttcgtc
    1101  ataacagtga ctgtaaactt tcaatcagga gac