Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Denyenye1-2 polyprotein gene, partial cds.

ACC No: HM346937

Dated: 2011-03-23 | Length: 1675 | CRC: 716169146

                
ID   HM346937; SV 1; linear; genomic RNA; STD; VRL; 1675 BP.
XX
AC   HM346937;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Denyenye1-2 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1675
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1675
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1675
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Denyenye1-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Denyenye"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1476
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23649.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYVHNELSDPV
FT                   VFKGVVNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMPSSMKNDFSHRRRALEKVKLFL
FT                   DNLVVKQKEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDGDNQRSGKEVIDESQNNQQVD
FT                   PRKPKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDV
FT                   IQNFLAYVPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGT
FT                   SDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSV
FT                   AAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFA
FT                   LAAPGDDNNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1473
FT                   /product="coat protein"
XX
SQ   Sequence 1675 BP; 550 A; 251 C; 407 G; 467 T; 0 other;

hm346937 Length: 1675  23-MAR-2011  Type: N  Check: 479  ..

       1  gggccataca tcaagtggtt tttaaaagaa ttaggtcttg aaggtgttgt
      51  taaaatgctg tcagcatttg gggataaatc agcatacgca ctatgtacat
     101  ttgcatatgt gcacaatgag ttgtctgatc cagttgtgtt caaaggagtt
     151  gtgaatggtg aaattgtacc accgcgaggt aacaatggtt ttggctggga
     201  tcctatattt aagcctgatg aatgtagttg tacatttgca gaaatgccaa
     251  gcagcatgaa gaatgatttt tcccacagaa gaagagcttt agagaaagtt
     301  aaattgtttc ttgataactt ggtggtgaag caaaaggaga agaaggcaag
     351  ggtggctctc acaattgatg ttcaggcctt aaatcaggag gaaatagaag
     401  cagagattac tgctttaaag aagctgtgga aagacaatgg gccaacaaga
     451  acgcgtagtc catttgaggc taggagattg agagccccac aagttgaacg
     501  tgtgaatgag ttacttcaga aactgaaaga tgaaggattg caaacaaaga
     551  agaggccatg tggagaacca gatgatgggg aagtggtaga tgatgatagt
     601  gatggtgata atcagagatc tggaaaggaa gttattgatg aaagccagaa
     651  taatcagcaa gttgacccaa gaaaaccaaa attcaaaatt agaggagatg
     701  gaagtgccat tagacgggat gacattgaca aaatcccaac taatgctctt
     751  gagattaaga agacatttaa gcctccaaag gtttcacagt cagcttacat
     801  ttggattcca cgctctcaga gggataatct aactcctgat gtaattcaga
     851  atttcctggc atatgtacct ccatctcatg ctatagataa tcaacttgct
     901  tcaggaatcg aagttgagaa ttgggcaatt gaggttgcta aagcatatgg
     951  agttaatata caggaatttt atcgcacagt tttgccagct tggattgtga
    1001  actgtatagt gaatggtact agcgatgaaa ggaagaatga gaaatcatgg
    1051  cgagcagtcg agttgaattc tcaaggagaa gatgttgatg attttgagta
    1101  tccaatggag ccaatgtaca aatttgcatt gccaactatg aggaaggtta
    1151  tgagaaactt ctctagccaa gctatcctca tgtaccagaa tagtgttgct
    1201  gcaggcaagg catttgtgat aaaagctgct agaaatgctg gatacacaag
    1251  cattgaaaat aaatggctag gtatagattt tcttgccgaa gcccaattgt
    1301  ctcagagtca acttgatatt aagcatcaga ttctggcagc gaatgttggt
    1351  agaacaaaga caaggctgtt tgcattagca gctcctggtg atgataataa
    1401  tgtggatagg gaaaggcaca cgacacacga tgtcagtgca aacaggcaca
    1451  gttacagtgg tgccgcaatt gaataaatga aatattagtg tttctgattg
    1501  agtttgaatg agattatagc ttagttggga agctaagcta tattttaaat
    1551  tcgaattcaa atacttaaat atcgtatttc gttttcaagt ttggtggagt
    1601  tttggataac caattatatt ttggttagat aagccagaat gtattttggg
    1651  gatctttctc catatccttc tatta