Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Kilifi18-2 polyprotein gene, partial cds.

ACC No: HM346938

Dated: 2011-03-23 | Length: 1681 | CRC: 579170614

                
ID   HM346938; SV 1; linear; genomic RNA; STD; VRL; 1681 BP.
XX
AC   HM346938;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Cassava brown streak virus isolate Kilifi18-2 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1681
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1681
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1681
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Kilifi18-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Kilifi"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1482
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23650.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYVHNESSDPI
FT                   VFKGVMNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMSNSMKNDFSHRRRALEKVKSFL
FT                   DSLVVKQEEKKKARVALTIDVQALNQEEIEAEITALKKLWRDNGPTRTRGPFEARRLRA
FT                   PQVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVIDESQNNQQ
FT                   VDPRKPKFKIRGDGSAVRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTP
FT                   DVIQNFLAYVPSSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWTVNCIVN
FT                   GTSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQN
FT                   SVAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRL
FT                   FALAAPGDDNNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1479
FT                   /product="coat protein"
XX
SQ   Sequence 1681 BP; 545 A; 250 C; 417 G; 469 T; 0 other;

hm346938 Length: 1681  23-MAR-2011  Type: N  Check: 7907  ..

       1  gggccataca tcaagtggtt tttaaaagaa ttgggtctcg aaggtgttgt
      51  taaaatgctt tcagcatttg gagataagtc agcgtacgca ctatgtacat
     101  ttgcatatgt gcacaatgag tcatccgatc caattgtgtt taaaggagtt
     151  atgaatggtg agattgtgcc accgcgaggt aacaatggtt ttggctggga
     201  tcctatattc aaacctgatg aatgtagttg tacgtttgca gaaatgtcaa
     251  acagcatgaa gaatgatttt tcccatagaa gaagagcttt ggagaaagtc
     301  aaatcgtttc ttgatagctt ggtggtgaag caagaggaga agaagaaggc
     351  aagggtggct ctaacgattg atgttcaggc cttaaatcag gaggaaatag
     401  aagcagagat cactgcttta aagaagctgt ggagagataa tgggccaaca
     451  agaacgcgtg gtccatttga ggctaggaga ttgagagccc cacaagttga
     501  gcgtgtaaat gagttacttc agaaactgaa agatgaagga ttgcaaacaa
     551  agaagaggcc atgtggagaa ccagatgatg gggaagtggt agatgatgat
     601  agtgatgatg gtaataatca gagatctgga aaggaagtta tcgatgaaag
     651  ccagaataat cagcaagttg atccaagaaa gccaaaattc aagattagag
     701  gagatggaag tgctgttaga cgggatgaca ttgataaaat tccaactaat
     751  gctcttgaga tcaaaaagac atttaagcct ccaaaggttt cacagtcagc
     801  ttacatttgg attccacgct ctcagaggga taatctaact cctgatgtaa
     851  ttcagaattt cctggcatat gtaccttcat ctcatgcaat agataatcaa
     901  cttgcttcag gaattgaagt tgagaactgg gcgattgagg ttgctaaagc
     951  atatggagtt aatatacagg aattttatcg cacaattttg ccagcttgga
    1001  ctgtgaactg tatagtgaac ggcactagcg atgaaaggaa gaatgagaag
    1051  tcatggcgag cagttgagtt gaattctcaa ggggaagatg ttgatgattt
    1101  tgagtatcca atggagccaa tgtacaaatt tgcattgcca actatgagga
    1151  aggttatgag aaacttctct agccaagcta tcctcatgta tcagaatagt
    1201  gttgctgcag gtaaggcgtt tgtgataaaa gctgctagaa atgctggata
    1251  cacaagcatt gaaaataaat ggctaggtat agattttctt gccgaggctc
    1301  aattgtctca gagtcaactt gatatcaagc atcagattct ggcagcgaat
    1351  gttggtagaa caaagacaag actgtttgca ttagcagctc ccggggatga
    1401  taacaatgta gatagagaaa ggcacacgac acacgatgtc agtgcaaaca
    1451  ggcacagcta cagtggtgcc gcaattgaat aaatgaaata ttagtttttc
    1501  taattgagtt tgaatgagat tatagcttag ttgggaagct aagttatatt
    1551  ttaaatttga attcaagtac ttaaatattg tatttcgttt tcaagtttgg
    1601  tggagttttg gatagccaat tatattttgg ttagattagc cagaatgtat
    1651  tttggagatc tttctccata tccttctgtt a