Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Diani3-1 polyprotein gene, partial cds.

ACC No: HM346941

Dated: 2011-03-23 | Length: 1678 | CRC: -1613418702

                
ID   HM346941; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   HM346941;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Cassava brown streak virus isolate Diani3-1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1678
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1678
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1678
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Diani3-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Diani"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23653.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYAHNELSDPI
FT                   VFKGIVNGEIVPPRGNNGFGWDPIFKPDECSYTFAEMPSNIKNNFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDIQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVIDESQNNQQV
FT                   DPKKPKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDNNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1476
FT                   /product="coat protein"
XX
SQ   Sequence 1678 BP; 550 A; 252 C; 414 G; 462 T; 0 other;

hm346941 Length: 1678  23-MAR-2011  Type: N  Check: 5778  ..

       1  gggccataca tcaagtggtt tttgaaggaa ttgggtcttg aaggtgttgt
      51  taaaatgctg tcagcatttg gagataagtc agcgtacgca ttatgcacat
     101  tcgcatacgc gcacaatgaa ttgtctgatc caattgtgtt taaaggaatt
     151  gtgaatggtg agattgtgcc accacgaggt aacaatggtt ttggctggga
     201  tcctatattt aagcctgatg aatgtagtta tacattcgca gaaatgccaa
     251  gcaacattaa gaataatttt tcccacagga gaagagcttt agagaaagtg
     301  aaattgtttc ttgataactt ggtggtgaag caagaagaga agaaggcaag
     351  ggtggctcta acgattgata ttcaggcctt aaatcaggag gaaatagaag
     401  cagagatcac tgctttaaag aagctgtgga aagataatgg accaacaaga
     451  acgcgtagtc cattcgaggc tagaaggttg agagctccac aagttgagcg
     501  tgtgaatgag ttacttcaga aactgaaaga tgaaggattg caaacaaaga
     551  agaggccgtg tggagagcca gacgatggag aagtggtaga tgatgatagt
     601  gatgatggta ataatcagag atctggaaag gaagtcattg atgagagcca
     651  gaataaccaa caagttgatc caaagaagcc gaaattcaaa attagaggag
     701  atggaagtgc tattagacgg gatgacattg acaagattcc aactaatgct
     751  cttgagatca agaagacgtt taagcctcca aaggtgtcac agtcagctta
     801  catttggatt ccacgctctc aaagggataa tctaactcct gatgtaattc
     851  agaatttcct ggcatacata cctccatctc atgctataga taatcaactt
     901  gcttcaggaa ttgaagttga gaattgggca attgaggtcg ctaaagcata
     951  tggagttaat atacaggaat tttatcgcac gattttgcca gcttggatag
    1001  tgaactgtat agtgaatggt actagcgatg aaaggaaaaa tgagaagtca
    1051  tggcgagcag tcgagttgaa ttctcagggg gaagatgttg atgattttga
    1101  gtatccaatg gagccaatgt acaaatttgc attaccaact atgaggaagg
    1151  taatgagaaa cttttctagt caagcaatcc tcatgtatca gaatagtgtt
    1201  gctgcaggta aggcgtttgt gattaaagct gctaggaatg ctggatacac
    1251  aagtatcgaa aataaatggc taggtataga ttttcttgcc gaagcccaat
    1301  tgtctcagag tcaacttgat atcaagcatc agattttggc agcgaatgtt
    1351  ggtagaacaa aaacaagact gtttgcacta gcagctcctg gggatgataa
    1401  caatgtagat agagaaaggc acacgacaca cgatgtcagt gcaaacaggc
    1451  acagctacag tggtgccgca attgaataaa taagatatta gtgtttctaa
    1501  ttgagtttga atgagattat agcttagttg ggaagctaag tcatatttca
    1551  aattcgaatt caagtactta aatattgtat tttgttttca agtttggtgg
    1601  agttttggat agccaattat gttttggttg gataagccag aatgtatttt
    1651  ggagatcttt ctccatatcc ttttgtta