Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Shirazi7-1 polyprotein gene, partial cds.

ACC No: HM346944

Dated: 2011-03-23 | Length: 1678 | CRC: -339425064

                
ID   HM346944; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   HM346944;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Shirazi7-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1678
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1678
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1678
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Shirazi7-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Shirazi"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23656.1"
FT                   /translation="GPYIKWFLKELGLDGVVKMLSAFGDKSAYALCTFAYVHNELSDPI
FT                   VFKGVVNGEIVPPRGSNGFGWDPIFKPDGCSCTFAEMPSSIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQRLKDEGLQTKKRPCGEPDDGEVVDDDSDGGNNQRSGKEVVDESQNDQQV
FT                   DPRKPKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VVQNFLAYIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDGNVDKERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1476
FT                   /product="coat protein"
XX
SQ   Sequence 1678 BP; 543 A; 255 C; 416 G; 464 T; 0 other;

hm346944 Length: 1678  23-MAR-2011  Type: N  Check: 5471  ..

       1  gggccataca tcaagtggtt tttaaaagaa ttgggtcttg atggtgttgt
      51  caaaatgctg tcagcatttg gagataaatc agcgtacgca ttatgcacat
     101  tcgcatatgt gcacaatgag ttatctgatc caattgtgtt caaaggagtt
     151  gtgaatggtg aaattgtgcc accacgaggt agtaatggtt ttggctggga
     201  tcctatcttt aagcctgatg gatgtagttg tacgttcgca gaaatgccaa
     251  gcagcattaa gaatgatttt tctcacagaa gaagagcttt agagaaagtc
     301  aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaagcaag
     351  agtggctcta acgattgatg ttcaggcctt aaatcaggag gaaatagaag
     401  cagagattac tgctttaaag aagctgtgga aagataatgg gccgacaaga
     451  acgcgtagtc catttgaggc taggagattg agagccccac aagttgagcg
     501  tgtaaatgag ttgcttcaga gactgaaaga tgaaggactg caaacaaaga
     551  agaggccatg tggagaacca gatgatgggg aagtggtaga tgatgacagc
     601  gatggtggta acaatcagag atctggaaag gaagttgttg atgagagcca
     651  gaatgatcag caagttgatc caagaaagcc aaaattcaaa attaggggag
     701  atggaagtgc tattagacgg gatgacattg acaaaattcc aactaatgct
     751  cttgagatca agaagacgtt taagcctcca aaggtatcac agtcagctta
     801  catttggatt ccacgctctc aaagggataa tctaacccct gatgttgttc
     851  agaatttcct ggcatatata cctccatctc atgctataga taaccaactt
     901  gcttcaggaa ttgaagttga aaattgggca attgaggttg ctaaagcata
     951  tggagttaat atacaggaat tttatcgcac aattttgcca gcttggatag
    1001  tgaactgtat agtgaacggc actagcgatg aaaggaaaaa cgagaagtca
    1051  tggcgagcag tcgagttgaa ttctcagggg gaggatgttg atgattttga
    1101  gtatccaatg gagccaatgt acaaatttgc attgccaact atgaggaagg
    1151  ttatgagaaa cttttctagc caagctatcc tcatgtatca gaatagtgtc
    1201  gctgcaggaa aggcgtttgt gataaaagct gctagaaatg ctggatacac
    1251  aagtattgaa aacaaatggc taggtataga ttttctcgcc gaagctcaat
    1301  tgtctcaaag tcaacttgat atcaagcatc agattctggc agcaaatgtt
    1351  ggtaggacaa agacaaggct gtttgcatta gcagctcctg gggatgatgg
    1401  caatgtagat aaagaaaggc acacgacaca cgatgtcagt gcaaataggc
    1451  acagttatag tggtgccgca attgaataaa taaaatatta gtgtttctaa
    1501  ttaggtttaa gtgagattac agcttagttg gaaagctaag ctatatttca
    1551  aatttgaatt taattactta aatatcgtat tttattttca agtttggtgg
    1601  agttttggat agccaattat attttggttg ggtaagccaa aatgtatttt
    1651  ggagatcttt ctccatatcc ttctgtta