Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Mriana8-1 polyprotein gene, partial cds.

ACC No: HM346945

Dated: 2011-03-23 | Length: 1678 | CRC: -851723573

                
ID   HM346945; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   HM346945;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Cassava brown streak virus isolate Mriana8-1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1678
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1678
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1678
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Mriana8-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Mriana"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23657.1"
FT                   /translation="GPYIKWFLKELGLEGVVRMLSAFGDKSAYALCTFAYAHNESSDPI
FT                   VFKGVVNGEIVPPRGDNGFGWDPIFKPDGCGCTFAEMPSSIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRVP
FT                   QVERVNELLQKLRDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQV
FT                   DPRKQKFKIMGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSHAIDNQLASGIEVENWAIGVAKAYGVNIQEFYRTILPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKIMRNFSNQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTKLF
FT                   ALAAPGDDNNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1476
FT                   /product="coat protein"
XX
SQ   Sequence 1678 BP; 549 A; 246 C; 414 G; 469 T; 0 other;

hm346945 Length: 1678  23-MAR-2011  Type: N  Check: 6399  ..

       1  gggccataca tcaagtggtt tttaaaagaa ttgggtcttg aaggtgttgt
      51  tagaatgctg tcagcatttg gagataaatc agcgtacgca ttatgtacat
     101  tcgcatatgc gcacaatgag tcatctgatc caattgtgtt taaaggagtt
     151  gtgaatggtg aaattgtgcc accacgaggt gataatggtt ttggctggga
     201  tcctatcttt aagcctgatg gatgtggttg tacgttcgca gaaatgccaa
     251  gcagcatcaa gaatgatttt tctcacagaa gaagagcttt agagaaagtc
     301  aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaggcaag
     351  ggtggctcta acgattgatg ttcaggcctt aaatcaagag gaaatagaag
     401  cagagattac tgctttaaag aagttgtgga aagataatgg accaacaagg
     451  acacgtagtc catttgaggc taggagactg agagtcccac aagttgagcg
     501  tgtaaatgag ttacttcaga aactgagaga tgaaggattg caaacaaaga
     551  agaggccatg tggagaacca gatgatgggg aagtggtgga tgatgacagc
     601  gatgatggta ataatcagag atctggaaag gaagttgttg atgaaagtca
     651  gaataatcag caagttgatc caagaaagca gaaatttaaa attatgggag
     701  atggaagtgc tattagacgg gatgacattg ataaaattcc aactaatgct
     751  cttgagatca agaagacgtt caagcctcca aaggtgtcac agtcagctta
     801  catttggatt ccgcgctctc aaagggataa tttgactcct gatgtaattc
     851  agaatttcct ggcatatata cctccatctc atgctataga taaccaactt
     901  gcttcaggaa ttgaagttga gaattgggca attggggttg ctaaagcata
     951  tggagttaat atacaggaat tttatcgcac aattttgcca gcttggatag
    1001  tgaactgcat agtgaacggc actagcgatg aaaggaaaaa tgagaagtca
    1051  tggcgagcag tcgagttgaa ttctcagggg gaagacgttg atgattttga
    1101  gtatccaatg gagccaatgt ataaatttgc attgccaact atgaggaaga
    1151  ttatgagaaa cttctctaac caagcaatcc tcatgtatca gaatagtgtt
    1201  gctgcaggaa aggcgtttgt aataaaagct gctagaaatg ctggatatac
    1251  aagtattgaa aataaatggc taggtataga ttttcttgct gaagcccaat
    1301  tgtctcagag tcaacttgat atcaagcatc agattctggc agcgaatgtt
    1351  ggcaggacaa agacaaaact gtttgcatta gcagctcctg gagatgataa
    1401  caatgtagat agagaaaggc acacgacaca cgatgtcagt gcaaacaggc
    1451  acagttacag tggtgccgca attgaataaa taaaatatta gtgtttctaa
    1501  ttgagtttaa atgagattat agcttagttg gagagctaag ttatatttca
    1551  aatttgaatt caagtactta aatattgtat tttgttttca agtttggtgg
    1601  agttttggat agccaactat attctggtta gataagccag gatgtatttt
    1651  ggagatcttt ctccatatcc ttttgtta