Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Kikonde11-5 polyprotein gene, partial cds.

ACC No: HM346946

Dated: 2011-03-23 | Length: 1676 | CRC: 2089153699

                
ID   HM346946; SV 1; linear; genomic RNA; STD; VRL; 1676 BP.
XX
AC   HM346946;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Kikonde11-5 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1676
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1676
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1676
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Kikonde11-5"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Kikonde"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23658.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLSAFEDKSAYALCTFAYVHNESSDPI
FT                   VFKGVVNGEIVPPRGKNGFGWDPIFKPDESSCTFAEMSSSIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKRAKVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQV
FT                   DPRKPKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSHAIDNQLASGIEVENWAIEVAKAYGINIQEFYRTVLPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDNNVDKERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1476
FT                   /product="coat protein"
XX
SQ   Sequence 1676 BP; 552 A; 249 C; 413 G; 462 T; 0 other;

hm346946 Length: 1676  23-MAR-2011  Type: N  Check: 6770  ..

       1  gggccataca ttaagtggtt tttaaaagaa ttgggtctcg aaggtgttgt
      51  taaaatgctc tcagcatttg aagataaatc agcgtacgct ttatgcacat
     101  ttgcatatgt gcataatgag tcgtctgatc cgattgtgtt taaaggagtt
     151  gtgaatggtg aaatcgtgcc accacgaggg aaaaatggtt ttggctggga
     201  tcctatattt aagcctgatg aaagcagttg tacgtttgca gaaatgtcaa
     251  gtagcatcaa gaatgatttt tcccacagaa gaagagcttt agagaaagtc
     301  aagttgtttc ttgataactt ggtggtgaaa caagaggaga agagggcaaa
     351  ggtggctcta acgattgacg tccaggcctt aaatcaggag gaaatagaag
     401  cagagatcac tgctttaaag aagctttgga aagataatgg accaacaagg
     451  acacgtagtc catttgaggc taggagattg agagccccac aagttgagcg
     501  cgtaaatgag ctacttcaga aactaaaaga tgaaggattg caaacaaaga
     551  agaggccatg tggagaacca gatgatgggg aagtggtaga tgatgatagt
     601  gatgatggaa ataatcagag atctggaaag gaagttgttg atgagagtca
     651  gaataatcag caagttgatc caagaaagcc gaaattcaag attagaggag
     701  atggaagtgc tattaggcgg gatgacattg ataaaattcc aactaatgct
     751  cttgagatca agaaaacgtt caagcctcca aaggtgtcac agtcagctta
     801  catttggatt ccgcgctctc agagggataa tctaacccct gatgtaattc
     851  agaatttcct ggcatatata cctccatctc atgctataga caatcaactt
     901  gcttcaggaa ttgaagttga gaactgggca attgaagttg ctaaagcata
     951  tggaattaat atacaggaat tttatcgcac agttttgcca gcttggatag
    1001  tgaactgcat agtgaatgga actagtgatg agaggaagaa tgagaagtca
    1051  tggcgagcag ttgagctgaa ttctcagggg gaagatgttg atgattttga
    1101  gtatccaatg gagccaatgt ataaatttgc attgccaacc atgaggaagg
    1151  ttatgagaaa cttctctagt caagctatcc tcatgtatca gaatagtgta
    1201  gctgcaggta aagcgtttgt gataaaagct gctagaaatg ctggatacac
    1251  aagtatcgaa aataaatggc taggtataga ttttcttgcc gaagctcaat
    1301  tgtcccagag tcaacttgat atcaagcatc agattttggc agcaaatgtt
    1351  ggtagaacaa agacaagact gtttgcatta gcagctcctg gggacgataa
    1401  caatgtggat aaagaaaggc acacgacaca cgatgtcagt gcaaataggc
    1451  acagttacag tggtgccgca attgagtgaa taaagtatta atgttttaat
    1501  taagtttgga tgagattata gcttagtcgg aaagctaagt tatatttcaa
    1551  attcgaattt aaatacttaa atattatatt ttgttttcga gtttggtgga
    1601  gttttgggaa ccaattatat tttggttggg taagccaaaa tgtattttgg
    1651  agatctttct ccatatcctt ctgtta