Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Mbandar12-1 polyprotein gene, partial cds.

ACC No: HM346948

Dated: 2011-03-23 | Length: 1678 | CRC: 97567763

                
ID   HM346948; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   HM346948;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Mbandar12-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1678
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1678
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1678
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Mbandar12-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Mbandar"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23660.1"
FT                   /translation="GPYIKWFLKELGLDGVVKMLSAFGDKSAYALCTFAYVHNELSDPI
FT                   VFKGVVNGEIVQPRGNNGFGWDPIFKPDGCGSTFAEMPSSIKNEFSHRRRALEEVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTKTRSPLEAKRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVIDDDSDDGNNQRSGKEVVDESQNNQQV
FT                   DPRKSKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VVQNFLAYVPPSHAIDNQLASGIEVENWAIEVAKAYGVHIQEFYRTVLPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDGNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1476
FT                   /product="coat protein"
XX
SQ   Sequence 1678 BP; 546 A; 255 C; 414 G; 463 T; 0 other;

hm346948 Length: 1678  23-MAR-2011  Type: N  Check: 7298  ..

       1  gggccataca tcaaatggtt tttaaaagaa ttgggtcttg atggtgttgt
      51  caaaatgctg tcagcatttg gagataaatc agcgtacgca ctatgtacat
     101  tcgcatatgt gcacaatgag ttatctgatc caattgtgtt caaaggggtt
     151  gtgaatggtg aaattgtgca accacgaggt aataatggtt ttggctggga
     201  tcctatcttt aagcctgatg gatgtggtag tacgtttgca gaaatgccaa
     251  gcagcattaa gaatgaattt tctcacagaa gaagagcttt agaggaagtc
     301  aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaagcaag
     351  ggtggctcta acgattgatg ttcaggcctt aaatcaggag gaaatagaag
     401  cagagatcac tgctttaaag aagctgtgga aagataatgg accaacaaaa
     451  acgcgtagtc cacttgaggc taagagattg agagccccgc aagttgagcg
     501  tgtaaatgag ttacttcaga aactgaaaga tgaaggattg caaacaaaga
     551  agaggccatg tggagaacca gatgatgggg aagtgataga tgatgacagt
     601  gatgatggta acaatcagag atctggaaag gaagttgttg acgaaagcca
     651  gaataatcag caagttgatc caagaaagtc gaagttcaaa attaggggag
     701  atggaagtgc tattagacgg gatgacattg ataaaattcc aactaatgct
     751  cttgagatca agaagacgtt caagcctcca aaggtttcac aatcagctta
     801  catttggatt ccacgctctc aaagggataa tctaacccct gatgttgttc
     851  agaatttcct ggcatatgta cctccatctc atgctataga taaccaactt
     901  gcttcgggaa ttgaagttga aaattgggca attgaggttg ctaaagcata
     951  tggagttcat atacaggaat tttatcgcac agttttgcca gcttggatag
    1001  tgaactgtat agtgaacggc actagtgatg aaaggaaaaa cgagaagtca
    1051  tggcgagcag tcgagttgaa ttctcagggg gaggacgttg atgattttga
    1101  gtatccaatg gagccaatgt acaaatttgc attgccaact atgaggaagg
    1151  ttatgagaaa cttttctagc caagctatcc tcatgtatca gaatagtgtc
    1201  gctgcaggaa aggcgtttgt gataaaagct gctagaaacg ctggatatac
    1251  aagtattgaa aacaaatggc taggtattga ctttctcgcc gaagctcaat
    1301  tgtctcaaag tcaacttgat atcaagcatc agattctggc agcaaatgtt
    1351  gggaggacaa agacaaggct gtttgcatta gcagctcctg gagatgatgg
    1401  caatgtagat agagaaaggc acacgacaca tgatgttagt gcaaacaggc
    1451  acagttatag tggtgccgca attgaataaa taaaatatta gtgtttctta
    1501  ctaggtttga ataagattat agcttagttg gaaagctaag ctatatttca
    1551  aatttgaatt taagtactta aatatcgtat tttattttca agtttggtgg
    1601  agttttggat agccaattac attttggttg ggtaagccaa aatgtatttt
    1651  ggagatcttt ctccatatcc ttctgtta