Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Mwalumba16-2 polyprotein gene, partial cds.

ACC No: HM346949

Dated: 2011-03-23 | Length: 1679 | CRC: -215651141

                
ID   HM346949; SV 1; linear; genomic RNA; STD; VRL; 1679 BP.
XX
AC   HM346949;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Mwalumba16-2 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1679
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1679
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1679
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Mwalumba16-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Mwalumba"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23661.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYAHNESSDPI
FT                   VFKGVVNGEIVSPRGNNGFGWDPIFKPDECNCTFAEMPSNIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQRLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDEGQNNQQV
FT                   DPKKPKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKASQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKIMRNLSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTRTRLF
FT                   ALAAPGDDNNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1476
FT                   /product="coat protein"
XX
SQ   Sequence 1679 BP; 540 A; 258 C; 418 G; 463 T; 0 other;

hm346949 Length: 1679  23-MAR-2011  Type: N  Check: 9221  ..

       1  gggccataca tcaagtggtt tttgaaggag ttgggtcttg aaggtgttgt
      51  taagatgctg tcagcatttg gagataaatc agcgtacgca ctatgtacat
     101  tcgcatatgc gcacaatgag tcgtctgatc caattgtgtt taaaggagtt
     151  gtgaatggtg aaattgtgtc accacgaggt aacaatggtt tcggctggga
     201  tcctatattt aagcctgacg aatgtaattg tacgttcgca gaaatgccga
     251  gcaacattaa gaatgatttt tcccacagga gaagagcttt agagaaagtt
     301  aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaggcaag
     351  ggtagctcta acgattgatg ttcaggcttt gaatcaggag gaaatagaag
     401  cagagatcac tgctttaaag aagctgtgga aagataatgg accaacaaga
     451  actcgtagtc catttgaggc tagaaggttg agagccccac aagttgagcg
     501  tgtgaatgag ttacttcaga gactaaaaga tgaaggattg caaacaaaga
     551  agaggccgtg tggtgagcca gatgatggag aagtggtaga tgatgatagc
     601  gatgatggta ataatcagag atctggaaag gaagttgttg atgaaggcca
     651  gaataatcag caagttgatc caaagaagcc gaaattcaaa attagaggag
     701  atggaagtgc tattagacgg gatgacattg ataaaattcc aactaatgct
     751  cttgagatca aaaagacatt caagcctcca aaggcgtcac agtcagctta
     801  catttggatt ccacgttctc aaagggataa tctaacccct gatgtaattc
     851  aaaatttcct ggcatacata cctccatctc atgctataga taatcaactt
     901  gcctcaggaa ttgaagttga gaattgggca attgaggttg ctaaagcata
     951  tggagttaat atacaggaat tttatcgcac ggttttgcca gcttggatag
    1001  tgaattgtat agtgaatggc actagcgatg aaaggaaaaa tgagaagtca
    1051  tggcgagcag tcgagttgaa ttctcaaggg gaagatgttg atgattttga
    1101  gtatccaatg gagccaatgt acaaatttgc attgccaact atgaggaaga
    1151  ttatgagaaa cctttctagc caagctatcc tcatgtatca gaatagtgtt
    1201  gctgcaggta aggcgttcgt gatcaaagct gctaggaatg ctggatacac
    1251  aagtatcgaa aataaatggc taggtataga ttttcttgcc gaagcccaat
    1301  tgtcccagag tcaacttgat atcaagcatc agattctggc agcgaatgtt
    1351  ggtagaacaa ggacaaggct atttgcacta gcagctcctg gggatgataa
    1401  caatgtagat agagaaaggc acacgacaca cgatgtcagt gccaacaggc
    1451  acagctacag tggtgccgca attgaataaa taaaatatta gtgtttttta
    1501  attgagtttg aatgagatta taacttagtt ggaaagctaa gttatatttc
    1551  agattcgaat tcaagtactt aaatattgta ttttgttttc aagtttggtg
    1601  gagttttggg tagccaatta tgttttggtt ggataagcca gaatgtattt
    1651  tggagatctt tctccacatc cttctgtta