Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Chumani21-1 polyprotein gene, partial cds.

ACC No: HM346950

Dated: 2011-03-23 | Length: 1677 | CRC: -1836448715

                
ID   HM346950; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   HM346950;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Chumani21-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1677
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1677
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1677
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Chumani21-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Chumani"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23662.1"
FT                   /translation="GPYIKWFLKELGLDGVVKMLSAFGDKSAYALCTFAYAHNELSDPI
FT                   VFKGVVNGEIVPPRGNNGFGWDPIFKPDGCGCTFAEMPSSIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDGGNNQRSGKEVIDESQNNQQV
FT                   DPIKPKFKISGNGNAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSVENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDGNVDKERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1476
FT                   /product="coat protein"
XX
SQ   Sequence 1677 BP; 553 A; 256 C; 406 G; 462 T; 0 other;

hm346950 Length: 1677  23-MAR-2011  Type: N  Check: 1516  ..

       1  gggccataca ttaagtggtt cttaaaagag ttgggtcttg atggtgttgt
      51  caaaatgctg tcagcatttg gagataaatc agcgtacgca ctatgtacat
     101  ttgcatatgc gcacaatgag ctatctgatc caattgtgtt caaaggagtt
     151  gtgaatggtg aaattgtacc accgcgaggt aataatggtt ttggctggga
     201  tcctatcttt aagcctgatg gatgtggttg tacgtttgca gaaatgccaa
     251  gcagcataaa gaatgatttt tctcacagaa gaagagcttt agagaaagtc
     301  aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaagcaag
     351  ggtggctcta acaattgatg ttcaggcctt aaatcaggag gaaatagaag
     401  cagagattac tgctttaaag aagctgtgga aagataatgg gccaacaaga
     451  acgcgtagtc catttgaggc taggagattg agagccccac aagttgagcg
     501  tgtaaatgag ttacttcaga aactgaaaga tgaaggattg caaacaaaga
     551  agaggccatg tggagaacca gatgatgggg aagtggtaga tgatgacagc
     601  gatggtggta acaatcagag atctggaaag gaagttattg atgaaagcca
     651  gaataatcag caagttgatc caataaagcc aaaattcaaa attagtggaa
     701  atggaaatgc tattagacgg gatgacattg ataaaattcc aactaatgct
     751  cttgaaatta agaagacgtt caagcctcca aaggtgtcac agtcagctta
     801  catttggatt ccacgctctc aaagagacaa tctaacccct gatgttattc
     851  agaatttcct ggcatatata cctccatctc atgctataga taaccaactt
     901  gcctcaggaa ttgaagtaga aaattgggca attgaggttg ctaaagcata
     951  tggagttaat atacaggaat tttatcgcac agttttgcca gcttggatag
    1001  tgaactgtat agtgaacggc actagcgatg aaaggaaaaa cgagaagtca
    1051  tggcgagcag tcgagttgaa ttctcaaggg gaggatgttg atgattttga
    1101  gtatccaatg gagccaatgt acaaatttgc attgccaact atgaggaaga
    1151  ttatgagaaa cttttctagc caagctatcc tcatgtatca gaatagtgtc
    1201  gctgcaggaa aggcgtttgt gataaaagct gctagaaatg ctggatacac
    1251  aagtgttgaa aacaaatggc taggtataga ctttctcgcc gaagctcaat
    1301  tgtctcaaag tcaacttgac atcaagcatc agattttggc agcaaatgtt
    1351  ggtaggacaa agacaaggct gtttgcatta gcagctcctg gggatgatgg
    1401  taatgtagat aaagaaaggc acacgacaca cgatgtcagt gcaaacagac
    1451  acagttatag tggtgccgca attgaataaa taaaatatta gtgtttctag
    1501  ttaggtttga gtgagattat agcttagtta gaaagctaag ctatatttca
    1551  aatttgaatt taagtactta aatatcgtat tttattttca agtttggtgg
    1601  agttttggat agccaattac attttggttg ggtaagccaa aatgtatttt
    1651  ggagatcttt ctccatatcc ttctgtt