Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Kabanyoro4-3 polyprotein gene, partial cds.

ACC No: HM346952

Dated: 2011-03-23 | Length: 1677 | CRC: 990212875

                
ID   HM346952; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   HM346952;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Kabanyoro4-3 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1677
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1677
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1677
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Kabanyoro4-3"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Kabanyoro"
FT                   /collection_date="May-2007"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23664.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLAAFGDKSAYALCTFAYVHNESSDPI
FT                   VFKGVVNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMSSSMKNDFSHRRRALEKVKSFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEVEAEITALKKLWRDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVIDESQNNQQV
FT                   DPRKPKFKIRGDGSAVRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYVPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDNSVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376. .1476
FT                   /product="coat protein"
XX
SQ   Sequence 1677 BP; 543 A; 247 C; 419 G; 468 T; 0 other;

hm346952 Length: 1677  23-MAR-2011  Type: N  Check: 5485  ..

       1  gggccataca tcaagtggtt tttaaaagaa ttgggtcttg aaggtgttgt
      51  caaaatgctg gcagcatttg gagataagtc agcgtacgca ctatgtacat
     101  ttgcatatgt gcacaatgag tcgtctgatc caattgtgtt taaaggagtt
     151  gtgaatggtg aaattgtgcc accgcgaggt aacaatggtt ttggttggga
     201  tcctatattc aaacctgatg aatgtagttg tacgtttgca gaaatgtcaa
     251  gcagcatgaa gaatgatttt tcccatagaa gaagagcttt agagaaagtc
     301  aaatcatttc ttgataactt ggtggtgaag caagaggaga agaaggcaag
     351  ggtggctcta acgattgatg ttcaggctct gaatcaggag gaagtagaag
     401  cagagatcac tgctttaaag aagctgtgga gagataatgg gccaacaagg
     451  acgcgtagtc catttgaggc taggagattg agagccccac aagttgagcg
     501  tgtgaatgag ttacttcaga aactgaaaga tgaaggattg caaacaaaga
     551  agaggccatg tggagaacca gatgatgggg aagtggtgga tgatgatagt
     601  gatgatggta ataatcagag atctggaaag gaagttattg atgaaagcca
     651  gaataatcag caagttgatc caagaaagcc aaaattcaaa attagaggag
     701  atggaagtgc tgttagacgg gatgacattg ataaaattcc aactaatgct
     751  cttgagatca agaaaacatt taagcctcca aaggtttcac aatcagctta
     801  catttggatt ccacgctccc agagggataa tctgactcct gatgtaattc
     851  agaatttctt ggcatatgta cctccatctc atgcaataga taatcaactt
     901  gcttcaggaa ttgaagttga gaactgggca attgaggttg ctaaagcata
     951  tggagttaat atacaggaat tttatcgcac aattttgcca gcttggattg
    1001  tgaactgtat agtgaacggt actagcgatg aaaggaagaa tgagaagtca
    1051  tggcgagcag ttgaattgaa ttctcagggg gaagatgttg atgattttga
    1101  gtatccaatg gagccaatgt acaaatttgc attgccaact atgaggaagg
    1151  ttatgagaaa cttctctagc caagctatcc tcatgtatca gaatagtgtt
    1201  gctgcaggta aggcgtttgt gataaaagct gctagaaatg ctggatacac
    1251  aagcattgaa aataaatggc taggtataga ttttcttgcc gaggctcaat
    1301  tgtctcagag tcaacttgat atcaagcatc agattctggc agcgaatgtt
    1351  ggtagaacaa agacaagact gtttgcatta gcagctcctg gagatgataa
    1401  tagtgtagat agagaaaggc acacgacaca cgatgtcagt gcaaacaggc
    1451  acagctacag tggtgccgca attgaataaa tgaaatatta ggttttctga
    1501  ttgggtttga atgagattat agcttagttg gaaagctaag ttatatttca
    1551  aatttaaatt caaatactta aatattgtat ttcgttttca agtttggtgg
    1601  agttttggat agccaattac attttggtta gataagccag aatgtatctt
    1651  ggagatcttt ctccatatcc ttctgtt