Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Nampula1-1 polyprotein gene, partial cds.

ACC No: HM346953

Dated: 2011-03-23 | Length: 1614 | CRC: 1197200211

                
ID   HM346953; SV 1; linear; genomic RNA; STD; VRL; 1614 BP.
XX
AC   HM346953;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Nampula1-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1614
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1614
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1614
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Nampula1-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Mozambique:Nampula"
FT                   /collection_date="Nov-2007"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1512
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23665.1"
FT                   /translation="GPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFVNKVGDDPI
FT                   IFKGVLRGEIVVPRGPNSFGWDPIFQPLNWRRTFAEMMDEEKNMISHRFRALSLVRDFL
FT                   KDSSYFSFAKGVDRDLFIDAQAIDKDEIEAEITKLKEMWRNNKPTRTRSPFESKRLRAP
FT                   QVARVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQRTNKGKEPMESPTERN
FT                   QSEKSTGEEEEKHKETRFRIRAGGGSEKRDDIDKIPTNALEFRKSFKPPKVSQAAYVWI
FT                   PRSQRDNLTPDVIQNFLAYVPPSHAIDNQSASGVEVENWAIEVSKAYGVTIQEFYRTIL
FT                   PAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNF
FT                   SSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILA
FT                   ANVGRSKTKLFALAAPGDDNNVDKERHTTRDVSATRHSYAGAAIE"
FT   mat_peptide     376. .1509
FT                   /product="coat protein"
XX
SQ   Sequence 1614 BP; 533 A; 262 C; 400 G; 419 T; 0 other;

hm346953 Length: 1614  23-MAR-2011  Type: N  Check: 4570  ..

       1  gggccataca ttaagtggtt tatggaaggg attggattag aaggattgta
      51  taagttggta gagccatatc agaataaaat ggctagcgct ctctgtgtat
     101  ttgcttttgt gaataaagtt ggtgatgatc cgataatctt taagggtgtg
     151  ctaagaggtg agattgtggt accacgcgga ccaaattcat ttgggtggga
     201  cccaattttt cagccactta actggagaag gacatttgct gagatgatgg
     251  acgaagagaa gaatatgata tctcatcgat ttcgagctct gtcgttagta
     301  agagactttt tgaaggactc aagctatttc agctttgcaa agggtgttga
     351  tcgtgatctc ttcattgatg ctcaagcaat cgacaaggat gagattgaag
     401  ctgaaataac aaaattaaag gaaatgtgga ggaacaacaa gccaactaga
     451  actcgaagtc catttgaatc aaagaggctt cgtgctcctc aagtggcccg
     501  tgtgaatgaa ctgcttaaac aactgaaaga tgctgggata caaacaagta
     551  agaggccatg tggagaacct gatgaaggag aagttgctag cccagagtca
     601  agtgaagacg aggagcaacg aacaaataaa ggaaaagagc ctatggaatc
     651  acctactgaa cgaaatcaat cggagaaatc tacaggtgag gaggaggaga
     701  aacataaaga gacaaggttc agaataagag ctggtggtgg aagtgaaaag
     751  agagatgata tagataagat cccaaccaac gctctagaat ttcgaaagag
     801  cttcaaaccg ccaaaagtgt cacaagcagc atatgtgtgg ataccacgtt
     851  cgcaaagaga taatttgacg cctgatgtca tacagaactt tctagcgtac
     901  gtgcctccat cacacgctat agacaatcaa tcggcgtctg gagttgaagt
     951  tgagaattgg gccattgaag tttcaaaagc ttatggggtt accattcaag
    1001  agttttatag aacgatccta cctgcttgga ttgtcaattg tattgtgaat
    1051  ggaactagcg atgaaaggaa gaatgagaaa tcgtggagag ctgttgagtt
    1101  aaatgcacag ggtgaggata ttgatgattc agaatatcct atggaaccaa
    1151  tgtacaaatt tgctctcccg acaatgagga aaataatgag aaatttttcc
    1201  agccaagcaa ttctaatgta tcagaatagt gtaactgctg gaaaagcttt
    1251  tgtaataaaa gcagctcgaa atgctgggta tacaagcatt gaaaacaagt
    1301  ggctgggtat tgacttccta gccgaagcac aattgtcaca aagccaactt
    1351  gatatcaaac atcaaatatt ggctgcaaat gttggtagaa gtaaaactaa
    1401  gttgtttgct ttagctgctc ctggcgatga caataatgtg gataaagaaa
    1451  ggcacaccac gcgggatgtt agtgcaacta ggcatagcta tgctggtgct
    1501  gctattgaat aaattaattt gaaagtcaag cttggtggag ttttaggtag
    1551  cttgttatat tttggttgtg aagccaagat atattcagga gccctttctc
    1601  catatccttc tgtt