Sequence of DPV Cassava brown streak virus

Cassava brown streak virus isolate Zanzibar7-1 polyprotein gene, partial cds.

ACC No: HM346958

Dated: 2011-03-23 | Length: 1615 | CRC: 2078911555

                
ID   HM346958; SV 1; linear; genomic RNA; STD; VRL; 1615 BP.
XX
AC   HM346958;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Zanzibar7-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1615
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(PT 4):974-987(2011).
XX
RN   [2]
RP   1-1615
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1615
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Zanzibar7-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Tanzania:Zanzibar"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .1512
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADW23670.1"
FT                   /translation="GPYIKWFMEGIGLEGLYKSVEPYQNKMASALCVFAFVNKVGDDPI
FT                   IFKGVLRGEIVVPRGPNSFGWDPIFQPLNWRRTFAEMMDEEKNMISHRFRALSLVRDFL
FT                   KNSSYFSFAKGVDRDFFIDVQAIDKDEIEAEITKLKEMWRNNKPTRTRSPFESKRLRAP
FT                   QVARVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQRTNKGKEPMESPTERN
FT                   QSEKLIGEDEEKQKKTRFKIRAGGGSEKRDDIDKIPTKALEFRKSFKPPKVSQAAYVWI
FT                   PRSQRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTIL
FT                   PAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNF
FT                   SSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILA
FT                   ANVGRSKTKLFALAAPGDDNNVDKERHTTRDVSATRHSYAGAAIE"
FT   mat_peptide     376. .1509
FT                   /product="coat protein"
XX
SQ   Sequence 1615 BP; 530 A; 255 C; 404 G; 426 T; 0 other;

hm346958 Length: 1615  23-MAR-2011  Type: N  Check: 9990  ..

       1  ggaccataca tcaagtggtt tatggaaggg attggattgg aaggattgta
      51  taagtcggtg gagccatatc agaataaaat ggctagcgct ctctgtgtat
     101  ttgcttttgt gaataaagtt ggtgatgatc caataatctt taagggtgtg
     151  ctaagaggtg agattgtggt accacgtgga ccaaattcat ttgggtggga
     201  cccaattttc cagccactta actggagaag gacatttgct gagatgatgg
     251  acgaagagaa gaatatgata tctcatcgat ttcgagctct gtcgttagtg
     301  agggactttt tgaagaactc gagctatttc agctttgcaa agggcgttga
     351  tcgtgatttc tttattgatg ttcaagcaat tgacaaggat gagattgaag
     401  ctgaaataac aaaattaaag gaaatgtgga ggaacaacaa gccaactaga
     451  actcgaagtc catttgagtc aaagaggctt cgtgctcctc aagtggcccg
     501  tgtgaatgaa ctgcttaaac aactgaaaga tgctgggata caaacaagta
     551  agaggccatg tggagaacct gatgaaggag aagttgctag cccagagtca
     601  agtgaagacg aggagcaacg aacaaataaa ggaaaagagc ctatggaatc
     651  acctactgaa cgaaatcaat cagagaaact tataggtgag gatgaggaga
     701  aacagaaaaa gacaagattc aaaataagag ctggtggtgg aagtgaaaag
     751  agagatgata tagataagat tccaaccaaa gctctagaat ttcggaagag
     801  cttcaaacca ccaaaagtgt cacaagcagc atatgtgtgg ataccgcgtt
     851  cgcaaagaga taatttgacg cctgatgtca tacagaactt tctagcgtac
     901  gtgcctccat cacatgctat agacaatcaa ttggcttctg gagttgaagt
     951  tgagaattgg gccattgaag tttcaaaagc ttatggggtt accattcaag
    1001  agttttatag gacgatccta cctgcttgga ttgtcaattg tattgtgaat
    1051  gggactagcg atgaaaggaa gaatgagaaa tcgtggagag ctgttgagtt
    1101  aaatgcacag ggcgaggata ttgatgattc agaataccct atggaaccaa
    1151  tgtacaaatt tgctctcccg acaatgagga aaataatgag gaatttttcc
    1201  agccaagcaa ttctaatgta tcagaatagt gtgactgctg gaaaagcttt
    1251  tgtaataaaa gcagcccgaa atgctgggta tacaagcatt gaaaacaagt
    1301  ggctgggtat tgacttccta gccgaagcac aattgtcaca aagccaactt
    1351  gatatcaaac atcaaatatt ggctgctaac gttggtagaa gtaaaaccaa
    1401  gttgtttgct ttagctgctc ctggtgatga taataatgtg gataaagaaa
    1451  ggcacactac gcgggatgtt agtgcaacta ggcatagcta tgcaggtgct
    1501  gctattgaat aaattaattt gaaggtcaag tttggtggag ttttaggtag
    1551  cttgttatat tttggttgtg aagctaagat atattcagga gccctttctc
    1601  catatccttt tgtta