Sequence of DPV Sidastrum golden leaf spot virus
Sidastrum golden leaf spot virus isolate DF334 segment DNA-A, complete sequence.
ACC No: HM357458
Dated: 2011-01-27 | Length: 2666 | CRC: -2089898247
ID HM357458; SV 2; linear; genomic DNA; STD; VRL; 2666 BP.
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AC HM357458;
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DT 27-JUL-2010 (Rel. 105, Created)
DT 27-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Sidastrum golden leaf spot virus isolate DF334 segment DNA-A, complete
DE sequence.
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KW .
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OS Sidastrum golden leaf spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2666
RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.;
RT "Sidastrum golden leaf spot virus: A new begomovirus infecting Sidastrum in
RT Brazil";
RL Unpublished.
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RN [2]
RP 1-2666
RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.;
RT ;
RL Submitted (25-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL Laboratorio de Analise Genomica, Embrapa-Hortalicas, Km 09
RL Brasilia-Goiania, Brasilia, DF 70359-970, Brazil
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RN [3]
RC Nucleotide and amino acid sequences updated by submitter
RP 1-2666
RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.;
RT ;
RL Submitted (26-JAN-2011) to the EMBL/GenBank/DDBJ databases.
RL Laboratorio de Analise Genomica, Embrapa-Hortalicas, Km 09
RL Brasilia-Goiania, Brasilia, DF 70359-970, Brazil
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CC On Jan 26, 2011 this sequence version replaced gi:301068288.
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FH Key Location/Qualifiers
FH
FT source 1. .2666
FT /organism="Sidastrum golden leaf spot virus"
FT /segment="DNA-A"
FT /host="Sidastrum sp."
FT /isolate="DF334"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="Jan-2010"
FT /db_xref="taxon:858513"
FT gene 224. .991
FT /gene="AV1"
FT CDS 224. .991
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="CP"
FT /db_xref="UniProtKB/TrEMBL:E2GI60"
FT /protein_id="ADK55008.2"
FT /translation="MIYLKMPKRDPSWRSMAGTSKVSRSSNFSPRGGPKVNKASEWVNR
FT PMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRNDISHAGKVICISDVTRGSGITHRVG
FT KRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPNGTSPWTLVICSTCSTMSLV
FT LQLLRMISEIVIRFNTDSMPRSLVVNMPAMSRPWSGGFGRSILMSCITTRKLLDTRTIR
FT RMPSVVHGHVLMPLIPCMQLFKIRIYFYDSISI"
FT gene complement(988. .1389)
FT /gene="AC3"
FT CDS complement(988. .1389)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="Ren"
FT /db_xref="UniProtKB/TrEMBL:E2GI61"
FT /protein_id="ADK55010.2"
FT /translation="MHASGELITAHQAENGVYIWEITNPLYFKMHRVEDILFTGTRVYH
FT IQIRFNHNLRRALGLHKAFLNFQVWTTSMRASGTTYSSWSRHVSHAVLTTMRCILRFIM
FT SSEAVRFRNRTDRMSLMYSEDHSIKFKIY"
FT gene complement(1135. .1530)
FT /gene="AC2"
FT misc_feature complement(1135. .1530)
FT /gene="AC2"
FT /note="similar to transactivator protein"
FT gene complement(1397. .2482)
FT /gene="AC1"
FT CDS complement(1397. .2482)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="ADW10640.1"
FT /translation="MPSALFQRKKHFPNYLPSKPQLIKNISEYVESSMKMGNLIYTSCF
FT SSKGSSHVRIADSSILNIPAIPMYVMENTNHASPPQTPRHISRRTEITANGVVFRSTED
FT LLEGGQQTDDDATTAPLNAALYEETLLKSSKPEIRRRTLSSYHNIKANIERLFQKAPEP
FT WTPPFQLSSFTRVPDEMQEWADDYFGRGAAARPGKTDEYHRRRVIVGRGRQCGLVRLAH
FT IIILADTWTSILGFTQTKRNITSSMMSHRNILRLSTGKNLLGPKKTGSQIANTESQFKL
FT KEGSHQSCSAIQARGPAIKISLTKRKMLRLKSWTLHNAKFIFLDSPLYQTSTQDCEKES
FT NSDGDGFTSSAAAPYTSTSTA"
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SQ Sequence 2666 BP; 663 A; 612 C; 629 G; 762 T; 0 other;
hm357458 Length: 2666 27-JAN-2011 Type: N Check: 6241 ..
1 accggatggc cgcgcgattt ttccccccct cgcgtggcgc attgctgacc
51 gctcgatcta ggcgcgattg tttaggccca tgcgcttagg cccagtccat
101 ttgaattaaa gatgaaatct ttaataaaga ccaatcaaaa tgcgtctggg
151 aagcctagat atttgttcca atacttcggc cctaagtttt atgacgttat
201 aaaagtaaag caagcatgac gtcatgatat acttgaaaat gccgaagcgg
251 gatccctcat ggcgctcgat ggcgggaacc tcaaaggtaa gccgctcctc
301 caatttctcc ccccgtggag gcccaaaggt caataaggcc tctgaatggg
351 ttaacaggcc aatgtacagg aagcccagga tatacaggac gctaagaact
401 cctgatgttc ctagaggctg tgaagggcca tgtaaggtcc agtcgtacga
451 gcagcgtaac gatatctcac atgctggaaa ggtgatctgt atctccgacg
501 tcactcgcgg tagcggtatc acccatcgtg tcggtaagcg gttttgtgtt
551 aagtctgtgt atattttagg taagatctgg atggacgaga acatcaagtt
601 gaagaaccac acgaacagtg ttatgttctg gctggtccgg gatcggagac
651 ccaacggcac atccccatgg actttggtca tctgttcaac atgttcgaca
701 atgagcctag tactgcaact gttaagaatg atctccgaga tcgttatcag
751 gttcaacaca gattctatgc caaggtcact ggtggtcaat atgccagcaa
801 tgagcaggcc ctggtcaggc ggttttggaa ggtcaatact catgtcgtgt
851 ataacaacca ggaagctgct agatacgaga accatacgga gaatgcctag
901 tgttgtacat gggcatgtac tcatgcctct aatcccgtgt atgcaactct
951 tcaagatccg gatctatttt tacgattcga tctcaattta ataaattttg
1001 aattttattg aatgatcttc cgagtacatc agagacatac gatctgtcct
1051 gttgcgaaat cgaactgctt cggatgacat tataaagcgc agaatacacc
1101 tcattgttgt aagtacagca tgacttacat gcctcgacca acttgaataa
1151 gtcgtcccag aagctctcat cgatgtcgtc cagacttgga agttcaggaa
1201 tgccttgtgg agacccaacg ctctcctgag gttgtggttg aaccggatct
1251 ggatgtgata cactctggtc cctgtgaaca ggatgtcttc tactcggtgc
1301 atcttgaaat acaggggatt tgttatctcc cagatatata cgccattctc
1351 tgcctgatgt gcagtgatga gttccccgga tgcgtgcatc catgacctat
1401 gcagttgatg tggacgtata tggagcagcc gcactcgatg tgaatccgtc
1451 gccgtctgag ttgctctctt tttcgcaatc ctgtgttgat gtttgataga
1501 ggggggagtc gagaaagatg aatttagcat tatggagggt ccacgatttc
1551 aagcgcagca ttttcctctt tgtcaaggaa atctttatag ctggccccct
1601 cgcctggatt gcagagcacg attgatggga tccctccttt aatttgaact
1651 ggctttccgt atttgcaatt tgactgccag tctttttggg ccccaataaa
1701 ttctttccag tgcttaatct taagatattg cggtgtgaca tcatcgatga
1751 cgttatattc cgctttgtct gagtaaaccc tagaattgaa gtccaggtgt
1801 ccgctaaaat aattatgtgg gccaaacgca cgagcccaca ttgtcttccc
1851 cgtccgacta tcacccttcg acgatgatac tcatcggtct ttccaggccg
1901 cgcagcggca cccctcccaa aataatcatc tgcccactct tgcatctcgt
1951 ccggaactct agtgaacgag gagagttgaa acggaggagt ccatggttcc
2001 ggagcctttt gaaacagtcg ttcgatgtta gcctttatgt tatggtagct
2051 tgacaatgta cgcctccgga tctccggctt tgatgatttc aagagcgtct
2101 cctcgtacaa tgctgcgttc aacggcgctg tggtagcatc gtcgtctgtc
2151 tgttgccctc cttctagcag atcttccgtc gatctgaaaa ctaccccatt
2201 cgcagtaatc tccgtccttc tcgatatatg tcttggcgtc tgaggaggac
2251 ttgcatgatt cgtattttcc atgacataca ttggaattgc agggatgttt
2301 aagatcgaag aatctgcaat tcgtacatgt gaacttccct tcgaactgaa
2351 gcaggacgtg tagatgaggt tccccatttt catggagctc tctacatact
2401 ctgatatatt ttttattaac tggggtttcg agggcaaata attgggaaag
2451 tgcttcttcc tttgaaatag agcacttggc ataagtgagg aaataatttc
2501 tggattgtat tttaaaacgt tttgctggtg gcatttttgt aaataaggga
2551 gtgtctccaa ttgagctcct ctcaaacttg cgatatgtat tggagactac
2601 agacaatata tagtagagaa gttctctagg acctcgagac aagtggcggc
2651 ccatccgttt aatatt