Sequence of DPV Chino del tomate Amazonas virus
Chino del tomate Amazonas virus isolate AM10 segment DNA-A, complete sequence.
ACC No: HM357461
Dated: 2011-01-31 | Length: 2615 | CRC: -130619772
ID HM357461; SV 3; linear; genomic DNA; STD; VRL; 2615 BP.
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AC HM357461;
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DT 27-JUL-2010 (Rel. 105, Created)
DT 31-JAN-2011 (Rel. 107, Last updated, Version 3)
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DE Chino del tomate Amazonas virus isolate AM10 segment DNA-A, complete
DE sequence.
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KW .
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OS Chino del tomate Amazonas virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2615
RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.;
RT "Genomic organization of Chino del tomate Amazonas virus, a bipartite
RT begomovirus endemic to the Amazon region of Brazil";
RL Unpublished.
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RN [2]
RP 1-2615
RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.;
RT ;
RL Submitted (25-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL Laboratorio de Analise Genomica, Embrapa-Hortalicas, Km 09
RL Brasilia-Goiania, Brasilia, DF 70359-970, Brazil
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RN [3]
RC Nucleotide and amino acid sequences updated by submitter
RP 1-2615
RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.;
RT ;
RL Submitted (26-JAN-2011) to the EMBL/GenBank/DDBJ databases.
RL Laboratorio de Analise Genomica, Embrapa-Hortalicas, Km 09
RL Brasilia-Goiania, Brasilia, DF 70359-970, Brazil
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RN [4]
RC Sequence update by submitter
RP 1-2615
RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.;
RT ;
RL Submitted (28-JAN-2011) to the EMBL/GenBank/DDBJ databases.
RL Laboratorio de Analise Genomica, Embrapa-Hortalicas, Km 09
RL Brasilia-Goiania, Brasilia, DF 70359-970, Brazil
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CC On Jan 28, 2011 this sequence version replaced gi:320099836.
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FH Key Location/Qualifiers
FH
FT source 1. .2615
FT /organism="Chino del tomate Amazonas virus"
FT /segment="DNA-A"
FT /host="Lycopersicon esculentum (tomato)"
FT /isolate="AM10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="Nov-2007"
FT /db_xref="taxon:858516"
FT gene 169. .969
FT /gene="AV1"
FT CDS 169. .969
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="CP"
FT /db_xref="UniProtKB/TrEMBL:E2GI67"
FT /protein_id="ADK55015.3"
FT /translation="MSKCRSAISHGARWREPLRSAAMSTPRLVQVSAQNSTRPLNGSTG
FT PCIGSPGSIARSDLPMCLEGVKGRVRSSPYEPGATNISHVGKVMCISDVTRGNGITHRV
FT GKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPS
FT TATIKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHT
FT ENALLLYMACTHASNPVYATLKIRIYFYDSGFKLIKFEFYLMIL"
FT gene complement(955. .1332)
FT /gene="AC2"
FT CDS complement(955. .1332)
FT /codon_start=1
FT /gene="AC2"
FT /product="replication enhancer protein"
FT /note="Ren"
FT /db_xref="UniProtKB/TrEMBL:E2GI68"
FT /protein_id="ADK55017.2"
FT /translation="MDSRTEELITAHQAENGVYIWEITNPLYFKIYNVETPMYTNSRVY
FT HIQIRFNHNLRKELNLHKAILNFQVWTTSVTASGTTYLNKFRHLVMLYLDQLGVISINN
FT VIRAVQFATDKRYVTSVLENH"
FT gene complement(1079. .1468)
FT /gene="AC3"
FT CDS complement(1079. .1468)
FT /codon_start=1
FT /gene="AC3"
FT /product="transactivator protein"
FT /note="Trap"
FT /db_xref="UniProtKB/TrEMBL:E2GI69"
FT /protein_id="ADK55016.2"
FT /translation="MRSSSPSAPPSIKRAHRQAKKRAIRRRRIDLECGCSIYLHIGCTG
FT HGFTHRGTHHCTSGREWRVYLGDNKSPIFQDIQRRDTHVHELQGVSHTNTVQSQPQEGV
FT ESTQSHPEFPSLDDISDSFWDDIFK"
FT gene complement(1432. .2523)
FT /gene="AC1"
FT CDS complement(1432. .2523)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="ADW10637.1"
FT /translation="MSQFSESSNWGDKPILPKCHHPSVSKSLPKTISLLILIALSPKTM
FT HFPNSSTFKPQLTNYSFVLQESFTRMGSLISMCLSNSKGNTNAPTTDSSTWYPQPDQHI
FT SIRTFRELKKQAQTSKPIWRKTETSLIMEFSRSMDDQLEEVANLPTTLMPRLSMQAMQP
FT RPSIYSERNNPETFLQIIIISKQMQKGFLLRLRNHGFLRFPSPHSLTFQKRCKSGQIII
FT SGEVPLRGRRDRLVSSSRVNSRTGKTMWARALGPHTYLSGHLDFNGTVYSNQVEYTVIA
FT AVAPHYLKLKHWKELIGSQKDWQSNCKYGKPVQIQGGIPSIVLCNPGSGFQLSRFPQQR
FT GKRITQELDPQECALHHPQLPPQ"
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SQ Sequence 2615 BP; 652 A; 554 C; 645 G; 764 T; 0 other;
hm357461 Length: 2615 31-JAN-2011 Type: N Check: 7846 ..
1 accggatggc cgcgcttttt ttgtcctggc ctttaatttc gaattaaagg
51 tggtccttcg cactttcgtc caattatatc gcgcctgatg tgtctagata
101 ttttaaacaa cttgggagcc aagttgtgat gtcgatataa aggaaaggac
151 cactgggcca catgcttcat gtcgaaatgc cgaagcgcga tctcccatgg
201 cgctcgatgg cgggaacctc taaggtcagc cgcaatgtca actcctcgcc
251 tcgtgcaggt atcggcccaa aactcaacaa ggcctctgaa tgggtcaaca
301 ggcccatgta taggaagccc aggatctatc gcacgctcag atctcccgat
351 gtgcctagag ggtgtgaagg gccgtgtaag gtccagtcct tatgaaccag
401 gcgccacgaa catatcacat gtcggcaagg taatgtgtat ttctgacgtg
451 acacgtggta atggcattac ccaccgtgtg ggtaagcgtt tttgtgttaa
501 gtctgtgtac attctaggta agatatggat ggatgagaac atcaagctga
551 agaaccacac gaacagtgtc atgttctggt tggttagaga ccgtagaccg
601 tatggaacgc ccatggattt tggacaagtg ttcaacatgt tcgacaacga
651 acctagcact gccacgatca agaacgatct ccgtgatcgt taccaggtca
701 tgcacaggtt ctatgggaag gtgacaggtg gacagtatgc gagcaacgag
751 caggctattg tcaggcgatt ctggaaggtc aacaatcatg tggtctacaa
801 tcatcaggag gctggaaagt atgagaatca cacagagaat gctttgttac
851 tgtacatggc atgcactcat gcctcaaacc ctgtatatgc tactctgaag
901 atccggatct atttttatga ttcgggtttc aaattaataa aatttgaatt
951 ttatttaatg attctctagt acagaagtta cataacgttt gtctgttgcg
1001 aattgaacag ctctaattac attattaatg gaaataacac ctaactggtc
1051 taagtacaac ataactaaat gcctaaattt atttaaatat gtcgtcccag
1101 aagctgtcac tgatgtcgtc cagacttgga aattcaggat ggctttgtgt
1151 agattcaact ccttcctgag gttgtgattg aaccgtattt gtatgtgata
1201 caccctggag ttcgtgtaca tgggtgtctc tacgttgtat atcttgaaat
1251 ataggggatt tgttatctcc cagatataca cgccattctc tgcctgatgt
1301 gcagtgatga gttcctctgt gcgtgaatcc atgcccagtg cagcctatgt
1351 ggaggtagat ggagcaaccg cactctagat caatgcgcct cctcctgatg
1401 gccctcttct tggcttgcct gtgtgctctc tttattgagg ggggagctga
1451 gggtgatgaa gagcgcattc ttgagggtcc agttcctgag tgatgcgttt
1501 tcctctttgt tgaggaaatc ttgatagctg gaaccctgac cctggattgc
1551 aaagcacgat tgatgggatt cctccttgaa tttgaactgg cttgccgtac
1601 ttgcaatttg actgccagtc tttttgtgac ccaatcaatt ctttccagtg
1651 ctttagcttt agatagtgcg gtgcgacggc agcaatgacg gtatactcca
1701 cttgatttga atagaccgta ccattgaaat ccagatgtcc actcagatag
1751 gtatgtgggc ctaacgcacg agcccacatt gtctttcctg ttcttgaatt
1801 caccctcgat gatgatacta atcggtctct ccggccgcgc agcggcacct
1851 ctcccgaaat aattatctgc ccactcttgc atctcttctg gaacgttagt
1901 gaatgaggag aggggaaacg gaggaatcca tggttccgga gccttagcaa
1951 aaatcctttc tgcatttgct ttgagattat gataatttgc aaaaaagtct
2001 ctgggttgtt cctctctgaa tatattgagg gcctgggttg catcgcctgc
2051 attgagagcc ttggcataag agtcgttggc agattggcaa cctcctctag
2101 ctgatcgtcc atcgatctgg aaaactccat gatcaatgaa gtctccgtct
2151 ttctccatat aggctttgac gtctgagctt gcttctttag ctccctgaat
2201 gttcggatgg aaatgtgctg atctggttgg ggataccaag tcgaagaatc
2251 tgttgttggt gcattggtat ttcccttcga attggataag cacatggaga
2301 tgaggctccc cattctcgtg aagctctctt gcaacacgaa tgaataattt
2351 gttagttggg gtttgaaggt tgatgaattg ggaaagtgca tcgtctttgg
2401 tgagagagca atgaggataa gtaaggaaat agtttttgga agagattttg
2451 aaacgcttgg gtggtggcat tttggtaata taggcttgtc cccccagttg
2501 gagctctctg aaaactgtga catgaattgg ggtaatgggg tacattatat
2551 agtagaagtc tcaatagaac ttcgtatctg aatccgcaca cgtggcggcc
2601 atccgttata atatt