Sequence of DPV Sida golden mosaic Florida virus
Sida golden mosaic Florida virus-Malvastrum strain Cuba:Havana:Malvastrum:123:2009 segment DNA-A, complete sequence.
ACC No: HM359015
Dated: 2010-09-28 | Length: 2607 | CRC: -87249272
ID HM359015; SV 1; circular; genomic DNA; STD; VRL; 2607 BP.
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AC HM359015;
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DT 16-AUG-2010 (Rel. 105, Created)
DT 28-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE Sida golden mosaic Florida virus-Malvastrum strain
DE Cuba:Havana:Malvastrum:123:2009 segment DNA-A, complete sequence.
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KW .
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OS Sida golden mosaic Florida virus-Malvastrum
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2607
RX PUBMED; 20677027.
RA Fiallo-Olive E., Martinez-Zubiaur Y., Moriones E., Navas-Castillo J.;
RT "Complete nucleotide sequence of Sida golden mosaic Florida virus and
RT phylogenetic relationships with other begomoviruses infecting malvaceous
RT weeds in the Caribbean";
RL Arch. Virol. 155(9):1535-1537(2010).
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RN [2]
RP 1-2607
RA Fiallo-Olive E., Martinez-Zubiaur Y., Moriones E., Navas-Castillo J.;
RT ;
RL Submitted (26-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL Departamento de Proteccion de Plantas, Centro Nacional de Sanidad
RL Agropecuaria, Carretera de Tapaste km 3 1/2, San Jose de Las Lajas, La
RL Habana 32 700, Cuba
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CC GenBank Accession Numbers HM359015-HM359016 represent the complete
CC genome of Sida golden mosaic Florida virus-Malvastrum strain
CC Cuba:Havana:Malvastrum:123:2009.
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FH Key Location/Qualifiers
FH
FT source 1. .2607
FT /organism="Sida golden mosaic Florida virus-Malvastrum"
FT /segment="DNA-A"
FT /host="Malvastrum coromandelianum"
FT /strain="Cuba:Havana:Malvastrum:123:2009"
FT /isolate="123"
FT /mol_type="genomic DNA"
FT /country="Cuba:Havana"
FT /collected_by="E. Fiallo-Olive"
FT /collection_date="2009"
FT /clone="123H11"
FT /db_xref="taxon:871521"
FT gene 182. .937
FT /gene="AV1"
FT CDS 182. .937
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ADL32222.1"
FT /translation="MSKRDGSWRSIAGMSKVKRTMNFSPRGGGGPKMTRAAEWVNRPMY
FT RKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(934. .1332)
FT /gene="AC3"
FT CDS complement(934. .1332)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancement protein"
FT /protein_id="ADL32223.1"
FT /translation="MDSRTGELITARQAENGVYIWEIENPLYFKIYSAEDQLYTRTRVY
FT HIQIRFNHNLRKALGLHKAYLNFQVWTTSMTVSGLTYLARFRHLVNMYLYQLGVIGINN
FT VIRAVRFATAKPYVNHVLENHIIKYKFY"
FT gene complement(1079. .1468)
FT /gene="AC2"
FT CDS complement(1079. .1468)
FT /codon_start=1
FT /gene="AC2"
FT /product="transactivator protein"
FT /protein_id="ADL32224.1"
FT /translation="MPYSSPSQPPSIKKAHRQAKRRAIRRRRIDLDCGCSIYFHIGCTG
FT HGFTHRGTHHCTSGREWRVYLGDRKSPLFQDIQRRGPAIHQNQSVPHTDKIQPQPEESV
FT GSPQSLPELPSLDDIDDSFWVNLFS"
FT gene complement(1380. .2465)
FT /gene="AC1"
FT CDS complement(1380. .2465)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="ADL32225.1"
FT /translation="MPSVKRFKINAKNYFITYPDCSLSKEEALSQLQNLSTPVNKKFIK
FT ICREFHQNGKPHLHVLIQFEGKYACTNYRFFDLVSPSMSVPFHPNIQGAKSSSDVKSYI
FT NKDGDTLEWGEFQIDGRSARGGCQSVNDTYAKALNASSAEEALQIIKEEQPQHFFLQHH
FT NLVANAHRIFSKAPEPWAPPFPLSSFTAVPDEMQEWADENFGRGAAARPERPMSIIVEG
FT DSRTGKTMWARSLGPHNYLSGHLDFNPRVFSNDVEYNVIDDVAPQYLKLKHWKELLGAQ
FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLAKEENTGLKNWTNKNAIFITLT
FT APLYQEGTQASQEAGNQETQD"
FT gene complement(2051. .2308)
FT /gene="AC4"
FT CDS complement(2051. .2308)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ADL32226.1"
FT /translation="MGSLISTCLYNSRGNMHARITDSSTWSHHPCQSHSIQTYRELNPA
FT PMSSPTSTRTETHWNGVNSRSTGEVLEEAANRLTIHMPRR"
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SQ Sequence 2607 BP; 649 A; 571 C; 622 G; 765 T; 0 other;
hm359015 Length: 2607 28-SEP-2010 Type: N Check: 4089 ..
1 accggatggc cgcgctttgg tgcccgctcc tatgcgcttt aatttgaatt
51 aaagcttgcc gcttttcctt tgtccaatga tattgcgcct ggcaagccta
101 aataattcaa acaacttggg ccctaagttg ttttgggcct attaaaggaa
151 aagcttgttg ggccacacat aacagtccat tatgtctaag cgcgatggtt
201 cctggcgctc tatcgcggga atgtcaaaag tgaaacgcac tatgaatttc
251 tctcctcgtg gaggtggtgg cccaaaaatg acaagggccg ctgaatgggt
301 gaacaggcct atgtacagga agcctaggat ttatcggact cttaggacgc
351 ctgatattcc gagaggctgt gaaggccctt gcaaggtgca gtcttacgaa
401 caacggcatg atatctcaca tgtcgggaag gtcatgtgta tttcagatgt
451 gacacgtggt aacggcatta ctcatcgtgt tggtaagcga ttctgtgtta
501 agtctgtgta tattttaggt aaggtttgga tggatgagaa catcaagctc
551 aagaaccaca cgaacagtgt tatgttctgg ttggtcaggg atcgtcgacc
601 gtatggcact ccgatggatt tcggtcaggt gttcaacatg ttcgataacg
651 agcctagcac tgcgactgtg aagaacgatc tccgtgatcg ttatcaagtc
701 atgcacaagt tctatgccaa ggtcacaggt ggtcaatatg ccagcaacga
751 gcaagctctc gtcaagaggt tctggaaggt caacaatcat gtggtctaca
801 atcatcagga agctggcaag tacgagaatc atacggagaa tgcgttacta
851 ttgtatatgg catgtactca tgcctctaac cctgtatatg cgacattgaa
901 aattcggatc tatttttatg attcgataac aaattaataa aatttatatt
951 ttattatatg attctcaagc acatgattta catatggttt ggctgttgca
1001 aaacgaacag ctctaattac attgtttatc ccaattacac ctaattggta
1051 caagtacatg ttaaccagat gcctaaatct agctaaataa gttaacccag
1101 aaactgtcat cgatgtcgtc cagacttgga agttcaggta ggctttgtgg
1151 agacccaacg ctttcctcag gttgtggttg aatcttatct gtatgtggta
1201 cactctggtt ctggtgtata gctggtcctc tgcgctgtat atcttgaaat
1251 agaggggatt ttctatctcc cagatataca cgccattctc tgcctgacgt
1301 gcagtgatga gttcccctgt gcgtgaatcc atggcccgtg cagccgatgt
1351 ggaagtaaat ggagcacccg caatctagat caatcctgcg tctcctgatt
1401 gcccgcctct tggcttgcct gtgtgccttc ttgatagagg ggggctgtga
1451 gggtgatgaa tatggcattc ttgttggtcc aattctttag acctgtgttt
1501 tcctctttgg ctaggaaatc tttatagcta gcaccctcac caggattgca
1551 aagcacgatt gctgggatcc cgcctttaat ttgaactggc ttgccgtact
1601 tgcaatttga ttgccagtcc ttctgggccc ccagaagttc tttccagtgc
1651 tttaacttta gatattgcgg tgcgacgtca tcaatgacgt tatactccac
1701 gtcatttgaa aatactcgag ggttgaagtc cagatgtcca ctaagataat
1751 tatgtgggcc taacgaacga gcccacatcg tcttccctgt cctcgagtca
1801 ccttctacta tgatactcat aggtctctcc ggccgcgcag cggcacctct
1851 tccaaaattc tcatcggccc attcttgcat ctcgtcggga acggctgtga
1901 aagaagagag gggaaacgga ggagcccatg gctcaggagc cttactgaaa
1951 atccgatgag cattggcaac cagattgtga tgctgaagaa agaaatgttg
2001 aggctgttcc tccttgatta tttgcagagc ctcttctgca gaagaggcat
2051 tcaacgcctt ggcatatgta tcgttaaccg attggcagcc tcctctagca
2101 cttctcccgt cgatctggaa ttcaccccat tccagtgtgt ctccgtcctt
2151 gttgatgtag gacttgacat cggagctgga tttagctccc tgtatgtttg
2201 gatggaatgg gactgacatg gatggtgaga ccaggtcgaa gaatctgtaa
2251 ttcgtgcatg catatttccc ctcgaattgt ataagcacgt ggagatgagg
2301 cttcccattc tgatggaact ctctgcagat cttgatgaac ttcttgttca
2351 caggagtgga caggttttgt aattgagaaa gtgcttcttc tttgctcagg
2401 gagcagtcgg gatatgtgat gaaatagttt ttggcattta ttttaaaacg
2451 tttaactgat ggcatttttg taaatataag agtgttcccc aattggagct
2501 ctctcaactt gctcatacaa ttggggaatg gggaacaata tatactagaa
2551 ccctcaatag aactttggat ctcgttcaca cacgtggcgg ccatccgcta
2601 taatatt