Sequence of DPV African cassava mosaic virus
African cassava mosaic virus strain Pakistan/Multan/Tomentosum/08, complete genome.
ACC No: HM468428
Dated: 2012-08-29 | Length: 2790 | CRC: -259630848
ID HM468428; SV 1; circular; genomic DNA; STD; VRL; 2790 BP.
XX
AC HM468428;
XX
DT 02-JAN-2012 (Rel. 111, Created)
DT 29-AUG-2012 (Rel. 113, Last updated, Version 2)
XX
DE African cassava mosaic virus strain Pakistan/Multan/Tomentosum/08, complete
DE genome.
XX
KW .
XX
OS African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-2790
RX PUBMED; 22899988.
RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.;
RT "A melting pot of old world begomoviruses and their satellites infecting a
RT collection of gossypium species in pakistan";
RL PLoS One 7(8):E40050-E40050(2012).
XX
RN [2]
RP 1-2790
RA Nawaz-ul-Rehman M.S., Fauquet C.M.;
RT ;
RL Submitted (08-JUN-2010) to the INSDC.
RL ILTAB, Danforth Plant Science Center, 975 N Warson Rd., St. Louis, MO
RL 63132, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2790
FT /organism="African cassava mosaic virus"
FT /host="Gossypium tomentosum"
FT /strain="Pakistan/Multan/Tomentosum/08"
FT /mol_type="genomic DNA"
FT /country="Pakistan"
FT /collected_by="M S Nawaz-ul-Rehman"
FT /collection_date="Apr-2008"
FT /db_xref="taxon:10817"
FT gene 136. .477
FT /gene="AV2"
FT CDS 136. .477
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /db_xref="GOA:G9B5D8"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:G9B5D8"
FT /protein_id="AEI17656.1"
FT /translation="MWDPLVNESPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL
FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV
FT QKAHDVQDV"
FT gene 296. .1075
FT /gene="AV1"
FT CDS 296. .1075
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:G9B5D9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:G9B5D9"
FT /protein_id="AEI17657.1"
FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW
FT MNRPMYRKPMMYRMYRSPDIPRGCERPMSRSSRLSRGMMLSTLVSVSDYVMCTRGPRLT
FT RRVGKRFCIKSVYILGKIWMDENIKKQNHTNNVMFYLLRERRPYGNTPQDFGQIFNMTD
FT NEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKY
FT ENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
FT gene complement(1072. .1476)
FT /gene="REn"
FT CDS complement(1072. .1476)
FT /codon_start=1
FT /gene="REn"
FT /product="replication enhancer protein"
FT /db_xref="GOA:F6J0Y2"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:F6J0Y2"
FT /protein_id="AEI17658.1"
FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI
FT ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH
FT VIRAADHVLFNVIEKTIACQLTHEIKFNIY"
FT gene complement(1217. .1624)
FT /gene="TrAP"
FT CDS complement(1217. .1624)
FT /codon_start=1
FT /gene="TrAP"
FT /product="transcriptional activator protein"
FT /db_xref="GOA:G9B5E1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:G9B5E1"
FT /protein_id="AEI17659.1"
FT /translation="MQSSSPPQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI
FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ
FT PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL"
FT gene complement(1533. .2615)
FT /gene="AC1"
FT CDS complement(1533. .2615)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /db_xref="GOA:G9B5E2"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:G9B5E2"
FT /protein_id="AEI17660.1"
FT /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLDSLSHLTLSSL
FT KSVESCIRMGNLTCMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSHT
FT WIRTATPSNGDNFRSMDDLLEAVNSPQMMLTPKRLTAAVSQKLLMSLGNYSQRTLYFSF
FT IISNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVIEG
FT DSRTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDGVDPHYLKHFKEFMGSQRD
FT WQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITPTEP
FT LYSGSNQSQSQTIQEASHPA"
XX
SQ Sequence 2790 BP; 747 A; 563 C; 688 G; 792 T; 0 other;
hm468428 Length: 2790 29-AUG-2012 Type: N Check: 5408 ..
1 accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg
51 tcggccaatc atgtcgtagc gttaaaggtt atttattagt ggtgggccac
101 tatatacttg caggcgaagt cgttgctagt gcgcaatgtg ggatccactg
151 gtgaatgagt ctcctgactc ggtgcatggg cttaggtgta tgcttgcaat
201 taaatatttg caggccttag aggatacata cgagcccagt actctgggcc
251 acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc
301 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc
351 gaaggctgaa cttcgacagc ccatacagga accgtgctac tgcccccact
401 gtccacgtca caaatcgaaa acgggcctgg atgaacaggc ccatgtacag
451 aaagcccatg atgtacagga tgtatagaag cccagacata cccaggggct
501 gtgaaaggcc catgtcaagg tccagtcgtt tgagcagagg gatgatgtta
551 agcaccttgg tatctgtaag tgattacgtg atgtgcacac gtgggcctag
601 gctgacacgc agggtcggaa agaggttttg tatcaagtcc gtttacattc
651 ttggtaagat ctggatggat gaaaatatta agaagcagaa tcacactaat
701 aatgtgatgt tttacctgct tagggaaaga aggccttatg gcaatacgcc
751 ccaagacttt gggcagatat ttaacatgac tgataatgag cccagtactg
801 caacaattaa gaacgatttg agggataggt ttcaggtgtt gaggaaattt
851 catgccactg ttattggtgg tccatctggc atgaaggagc aggctttggt
901 gaaaaggttt tacaggttga atcatcacgt gacatataat catcaggagg
951 cagggaagta tgagaatcac acagagaatg cgttgctttt gtacatggca
1001 tgtactcatg cctccaatcc tgtatatgct acgttgaaaa tacgtatata
1051 tttctatgac agtattggca attaataaat attgaatttt atttcatgag
1101 tcaactgaca cgcaatagtt ttttcaatta cattgaacaa aacatgatca
1151 gcagctctaa ttacatggtt aattgagata acacctatat tatccaagta
1201 tttaagtact tggtatctaa agacccttaa gaaaagacca gtctgaggct
1251 gtaaggtcgt ccagatcctg aagttgagaa aacatttgtg aatccccagc
1301 tccttccgca ggttgtgatt gaatcgaacc tggactgtta tgatgtcctg
1351 gttcagcagg aatggtcgtt gttggtgcct ggttattgtg aaatacaggg
1401 gattgtttat ttcccaggta tacacgccat tcattgcttg aggagcagtg
1451 atgagttccc ctgtgcgtaa atccatgatt ggagcagttg atatggaggt
1501 aatatgaaca gccacagaca agatccactc tcctacgccg gatggctcgc
1551 ttcttgaatt gtctgtgact gactttgatt ggaacctgag tagagtggtt
1601 ctgtgggggt gatgaagatt gcattcttta atgcccaggc ctttagcgct
1651 tcttgctttt cctcgtctag gaactcttta taggacgagg ttggtcctgg
1701 attgcagagg aagatagtgg gaatgccacc tttaatttga acgggtttcc
1751 cgtattttgt gttggactgc cagtcccgct gggaccccat gaattcctta
1801 aagtgcttta ggtagtgtgg atcgacgcca tcaatgacgt tgtaccaagc
1851 agcattattg aagacctttg gactaaggtc caggtgtcca cacaggtaat
1901 tgtgtgggcc taaagatctg gcccatatcg tcttccctgt tctgctatca
1951 ccttctatga caatactatt gggtctccat ggccgcgcag cggaagccct
2001 aacattatca gcgacccatt cttcaagttc atcaggaact tggtcaaagg
2051 aagaacatgg gaagggagaa atataaggag ctggtggctc ctggaaaatc
2101 ctttctaaat tactatttga gattatgaaa ctgaagtaca aagtcctttg
2151 ggagtaattc cctaatgaca ttaagagctt ctgacttact gccgctgtta
2201 agcgctttgg cgtaagcatc atttgcggac tgttgaccgc ctctagcaga
2251 tcgtccatcg atctgaaatt gtccccattc gacggtgtcg ccgtccttat
2301 ccaggtatga cttgacatct gagcttgatt tggcaccttg aatgttgggg
2351 tggaaactgg tgctacagct tgggtgtaga caatcgaaga gacgattgtt
2401 cgtaatcgtg attttgccct cgaattggat gagggcatgc aagtgaggtt
2451 ccccattctg atgcagctct ctacagattt taatgaactt agggttagat
2501 gggagagaga gtctagagtt tgaatgaatg acagcaggtg ttctttgggg
2551 atagaacact ttgggtatgt gagaaagaca ttcttggctt gaactctaaa
2601 acgaggagtc ctcattttga ccaagtcaat tggagacact caactagaga
2651 cactcttgag catctcctcc tgttaattgg agacattata taggtgtctc
2701 taaatggcat tcttgtaata agttaaactt taatttgaat gaaaagcctc
2751 aaaaggcgca taacacccaa ggggccaacc gtataatatt