Sequence of DPV Velvet tobacco mottle virus
Velvet tobacco mottle virus strain K1, complete genome.
ACC No: HM754263
Dated: 2012-04-24 | Length: 4247 | CRC: -1439730780
ID HM754263; SV 2; linear; genomic RNA; STD; VRL; 4247 BP.
XX
AC HM754263; HM149348;
XX
DT 20-SEP-2010 (Rel. 106, Created)
DT 24-APR-2012 (Rel. 112, Last updated, Version 5)
XX
DE Velvet tobacco mottle virus strain K1, complete genome.
XX
KW .
XX
OS Velvet tobacco mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN [1]
RP 1-4247
RX DOI; 10.1007/s00705-010-0801-2.
RX PUBMED; 20857308.
RA Arthur K., Dogra S., Randles J.W.;
RT "Complete nucleotide sequence of Velvet tobacco mottle virus isolate K1";
RL Arch. Virol. 155(11):1893-1896(2010).
XX
RN [2]
RP 1-4247
RA Arthur K.R., Dogra S., Randles J.W.;
RT ;
RL Submitted (12-JUL-2010) to the INSDC.
RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd,
RL Adelaide, SA 5064, Australia
XX
RN [3]
RC Sequence update by submitter
RP 1-4247
RA Arthur K.R., Dogra S., Randles J.W.;
RT ;
RL Submitted (23-APR-2012) to the INSDC.
RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd,
RL Adelaide, SA 5064, Australia
XX
CC On Apr 23, 2012 this sequence version replaced gi:306991043.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4247
FT /organism="Velvet tobacco mottle virus"
FT /host="Nicotiana velutina"
FT /strain="K1"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /collection_date="1986"
FT /db_xref="taxon:12473"
FT 5'UTR 1. .52
FT misc_feature 1. .6
FT /note="ACAAAA motif"
FT CDS 53. .511
FT /codon_start=1
FT /product="P1"
FT /db_xref="UniProtKB/TrEMBL:E2IZN0"
FT /protein_id="ADN19013.1"
FT /translation="MPSIDVEVEKILHLSNRKRLRSVCVARKKTFVDKISEGFVCTLYG
FT EYDHDYVTSVHLHIVCSCGRAFFDFVEFKDIKLRDFQYQSQCICPTRNWSTVAYTDFTT
FT VNCQVEGCDYCEGIESDSDSDSEAIIEEFLQKFSEVGISGSSSSPQTN"
FT CDS 568. .2286
FT /codon_start=1
FT /product="P2a"
FT /note="polyprotein containing serine protease and VpG"
FT /db_xref="GOA:E2IZN1"
FT /db_xref="InterPro:IPR001254"
FT /db_xref="InterPro:IPR009003"
FT /db_xref="UniProtKB/TrEMBL:E2IZN1"
FT /protein_id="ADN19014.1"
FT /translation="MLSELVQLCLSATMTLALVVSMMLDPSYGWLITMSVMLVSLELTI
FT RPFRRSLDYMKIVVRDEPNEPEVARIVGAPTYHPIHGVVCKCLWNSKEFNVVVQPSLWP
FT LAFPPNISQGVVKEGAMIGVPFTSLPSGAEPKSLVVLYNDGVRIGMGSRVNWQGADYLL
FT TASHVWSLVTGDFQMAKASKMVSVKDAKCYVEAAHAKLDFALIKVPNKYWSSIGVGSAK
FT LLWHKPGQVVKVYGGRSDELVSSVGRAEKDPDLSLRLTHNASTAPGWSGSPLYNSENFV
FT VGLHTGFSAAEQRNEAVDVAKLLHLALRTKETTFSEIGVSLIDEDEIESRGYQFDDFEL
FT RGEVNVKGKMARNEISLIASKNKGKPCYLQEEGDDEFYDSIREKDFLARFREQTGKETV
FT GNLNCQRAAQTLEPPFENLRPCDGKNPELFKPAGWDSTMLESRLASLERALSTLLAEQS
FT VLLSKFSQNSNSMIGQKEALKPSSIPSSSKPAVSGEPPVQSKPSVNAKSSLRSTPKVEP
FT TVASGEKTSVNASSSGNKSKRRRRRRKSTTKPAPAPPGQDLKRPMVSSSPVSKTS"
FT misc_feature 1770. .1776
FT /note="-1 frameshift signal"
FT CDS 1866. .3512
FT /codon_start=1
FT /product="RNA dependent RNA polymerase"
FT /db_xref="GOA:E2IZN2"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:E2IZN2"
FT /protein_id="ADN19015.1"
FT /translation="MGFNYVGVSSCKFREGPKHAARGAISSAEQVFPELKQYDWPERGS
FT KAEFDSLLLQASRFRRTSCPEQTERKCEVLAEKYPKSRAHRCFRRENFCQRQLLREQIE
FT ATTTSPEINDKASPGSPWSRLEKTNGELISRFKDLLIEAVLRRVLLLASTPTSEILCMS
FT ASDLVRANLVDPVRLFVKQEPHTKKKLNERRFRLISSVSIVDQIIERLLFGPQNRLEIA
FT LWHQIPSKPGMGLSARTQADLLWNELFAKSEIAPAAEADISGFDWSVQEWELWADLSMR
FT ISLCEDMHDGLRRLMVNRYRCFMLSCFQLSNGELYEQVEPGLMKSGSYCTSSSNSRIRC
FT LMGYLIGAPWIIAMGDDSVEGYVRDAKGKYEELGHTCKEYELCDVDSDGALRSVNFCSH
FT LISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDYCCQVGLVPDKTYW
FT EEDHPADYVEETHQESGQADDTGNLAERADFCSVPTTETPKVDAARAEFYSYGPNGWSC
FT DIPEATHVNQWPLWGYSSSFGGGFGSPIWDY"
FT misc_feature 3225. .3230
FT /note="ACAAAA motif"
FT CDS 3262. .4107
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="GOA:E2IZN3"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:E2IZN3"
FT /protein_id="ADN19016.1"
FT /translation="MSKKLTKNQVKQMIQATLPKEQTSARSRRRRRRRSTQQGQSSTVM
FT APMAGAVIYRKRPMLINGRSGVTVRHSEVVLVVQSGTTNFSATSVTLAPNTFTWLAVQG
FT SLYSKWRWISLRATYVPETASTTPGTVAMGFQYDNTDVLPTGTAGMSSLHGFVSGAPWS
FT GFSGSKLLAESPTTPIPAGAIATRLDCQNFGLKWYQYKSVIPAGDSGNIYIPAQLIVGT
FT LGTGSTLRYGEVHIQYEIEFIEPLPPSVNTLRDIYSRMILSSASDERKGEKSSQTLTDR
FT "
FT 3'UTR 4108. .4247
XX
SQ Sequence 4247 BP; 1081 A; 945 C; 1084 G; 1137 T; 0 other;
hm754263 Length: 4247 24-APR-2012 Type: N Check: 5259 ..
1 acaaaatata ttgaagggaa agtcttgcac tcagtaccca ttatattttg
51 atatgcccag cattgatgtt gaagtagaaa agatcctgca cttgagcaac
101 agaaagagac taaggtctgt ctgtgtggcg aggaagaaga cgttcgtaga
151 caagatatcc gaaggatttg tctgcactct ttacggagag tacgatcacg
201 actacgtcac cagtgtgcat ttgcacattg tttgctcgtg cggtagagct
251 ttctttgatt ttgttgagtt caaggacata aaactccgag atttccaata
301 tcaaagtcag tgtatctgtc ccaccaggaa ttggtcgacg gtcgcttaca
351 ctgattttac taccgtcaac tgccaagtgg aaggttgtga ttactgtgag
401 gggattgagt cagactctga ttcggattct gaggccatca tagaggaatt
451 tcttcaaaag ttttccgagg ttggcatctc tggatcgtcc agttctcccc
501 agactaacta ggactcggtt ccgtttattt tcttacaaat catttaattg
551 ttttgtaatt gagaaagatg ttgagcgagt tagtccagtt gtgtctttca
601 gcaaccatga ctctagcgct ggtagtgtca atgatgctgg acccgagcta
651 cgggtggctg atcaccatgt ctgtgatgtt agtctcctta gagctgacaa
701 tcaggccgtt caggcgctct ctagactaca tgaaaattgt ggtccgagat
751 gagcccaatg agcctgaagt tgctaggata gtaggcgcgc caacttacca
801 cccaattcat ggcgttgttt gcaagtgtct gtggaactcg aaagagttca
851 atgtggttgt gcaacccagt ttgtggcctc tagcctttcc cccaaacata
901 tcacaagggg tagtaaagga aggagctatg ataggtgtac cattcacatc
951 cctaccctct ggagctgaac caaagtctct cgttgtctta tacaacgatg
1001 gagtcagaat cggtatgggc tctagagtta attggcaagg cgcagattac
1051 ttgttgacag cctcccacgt ttggtctctc gtaactggtg attttcaaat
1101 ggcaaaagcc agtaagatgg tctcagtgaa ggacgccaag tgttatgttg
1151 aggctgctca cgctaagctg gactttgccc taattaaagt tccgaacaaa
1201 tattggagct cgataggggt tggttcggct aaattgttgt ggcataagcc
1251 cgggcaagtg gtcaaggttt acggaggtag atctgatgaa ttggtctctt
1301 ctgtgggccg agccgaaaag gatcctgatc tgagcctacg tctgacccat
1351 aacgcttcaa ctgctccagg atggagcggc tccccgcttt acaactctga
1401 aaatttcgta gtgggattgc atactggctt ttccgcggct gagcagagaa
1451 atgaggcggt tgatgtagcg aagttgctgc acctcgccct tagaacaaag
1501 gaaacgacgt tttcggagat cggtgtctct cttatcgatg aagatgagat
1551 tgagtctcgc ggttaccaat tcgacgactt tgagcttagg ggtgaggtaa
1601 acgttaaagg gaaaatggcg cggaatgaga tatctctcat cgcctctaag
1651 aataaaggga aaccttgcta tcttcaagag gaaggtgatg atgaattcta
1701 tgactcgatc cgtgagaaag atttccttgc ccgcttccgt gaacaaactg
1751 gtaaagagac agtggggaat ttaaactgcc agagggcggc ccaaacattg
1801 gagccgccct tcgagaactt gaggccgtgc gatgggaaga acccagagct
1851 attcaaaccg gcgggatggg attcaactat gttggagtct cgtcttgcaa
1901 gtttagagag ggccctaagc acgctgctcg cggagcaatc agttctgctg
1951 agcaagtttt cccagaactc aaacagtatg attggccaga aagaggctct
2001 aaagccgagt tcgattccct cctcctccaa gccagccgtt tccggagaac
2051 ctcctgtcca gagcaaaccg agcgtaaatg cgaagtcctc gctgagaagt
2101 accccaaaag tagagcccac cgttgcttca ggagagaaaa cttctgtcaa
2151 cgccagctcc tcagggaaca aatcgaagcg acgacgacgt cgccggaaat
2201 caacgacaaa gccagccccg gctccccctg gtcaagactt gaaaagacca
2251 atggtgagct catctcccgt ttcaaagacc tcttaattga ggcagtgttg
2301 aggcgagttt tattgcttgc ctccactcca accagtgaga ttttatgcat
2351 gtctgcttca gatctcgtta gagctaactt agtggatcct gtgcgattgt
2401 tcgtcaagca ggaaccccat acgaagaaga agctgaatga gcgtcgcttt
2451 aggcttattt cgtctgtgtc tatagttgat cagataatcg agagattatt
2501 gtttggtcct cagaacaggc ttgagatagc cttatggcat cagatacctt
2551 ccaaacctgg aatgggactg agcgctcgta cgcaagctga tttgttgtgg
2601 aatgagttat tcgcaaagag cgagattgcc cctgcggccg aggctgacat
2651 ttcaggattt gactggtctg tgcaggaatg ggagttatgg gccgatctga
2701 gcatgaggat ttctttgtgc gaagatatgc atgatggtct acggaggttg
2751 atggttaaca gataccgctg ctttatgctc tcttgcttcc aattgtcgaa
2801 tggggaattg tatgaacaag ttgagcctgg actcatgaag tctggttcct
2851 actgcacttc ctcttccaac tccagaatca ggtgcctaat gggttatcta
2901 attggagccc cctggataat agccatgggg gatgattctg ttgagggtta
2951 tgtgagagac gcgaaaggca agtatgagga attaggacac acttgtaagg
3001 aatacgagtt gtgtgatgtt gattcagacg gcgcgttgag atctgtgaac
3051 ttttgttcac atttgatttc ccgcaacaag ttttggctca caagctggcc
3101 taaaaccttg tacaggttcc tagactctcc ctctgaaaat tttcatgatc
3151 ttgaaaggga acttggctca tgtcccaagt gggccaagat aaaggattat
3201 tgttgtcagg taggactggt ccctgacaaa acatattggg aagaagatca
3251 ccctgctgac tatgtcgaag aaactcacca agaatcaggt caagcagatg
3301 atacaggcaa ccttgccgaa agagcagact tctgctcggt cccgacgacg
3351 gagacgccga aggtcgacgc agcaagggca gagttctaca gttatggccc
3401 caatggctgg agctgtgata taccggaagc gacccatgtt aatcaatggc
3451 cgctctgggg ttacagttcg tcattcggag gtggttttgg tagtccaatc
3501 tgggactact aacttctcgg ccacttctgt tactctcgcg cctaacactt
3551 tcacctggtt agctgtacaa ggatccctct attctaaatg gaggtggata
3601 tcgcttagag ccacgtatgt gcccgaaacc gcttctacga ctcccggaac
3651 tgtggcaatg ggtttccagt atgacaatac tgatgtccta cccactggaa
3701 ccgctggtat gtctagtttg catggttttg tgtcaggcgc tccgtggtca
3751 ggctttagtg gttctaaact cctcgctgaa agtcccacca ctcccatccc
3801 tgctggagca atcgcaactc gacttgactg tcaaaatttc ggtctcaaat
3851 ggtatcagta caagtctgtt atacctgctg gtgattctgg aaacatctat
3901 attccagctc agttgattgt cggtaccctg gggactggtt caactttgag
3951 atatggtgaa gtgcacatcc agtatgagat tgagtttatt gagccccttc
4001 ctccttcggt gaacactctc agagatattt actctaggat gatcctaagt
4051 tcggcgtcag atgaaaggaa aggtgagaag tctagtcaga ctttaactga
4101 ccgctaggca agcgatataa cgccaccatt gacgtctgga gagacttaaa
4151 tgggttttgc ataactactc cggttgctac gtcatagcac gttaccaaga
4201 agttctcttg gtccctctac atggttgggt gaacaccatg tgttcat