Sequence of DPV Rhynchosia yellow mosaic India virus
Rhynchosia yellow mosaic India virus clone JRH1 segment DNA-A, complete sequence.
ACC No: HM777508
Dated: 2011-06-21 | Length: 2727 | CRC: 1375977423
ID HM777508; SV 1; circular; genomic DNA; STD; VRL; 2727 BP.
XX
AC HM777508;
XX
DT 29-DEC-2010 (Rel. 107, Created)
DT 21-JUN-2011 (Rel. 109, Last updated, Version 3)
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DE Rhynchosia yellow mosaic India virus clone JRH1 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Rhynchosia yellow mosaic India virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2727
RX PUBMED; 21318241.
RA Jyothsna P., Rawat R., Malathi V.G.;
RT "Molecular characterization of a new begomovirus infecting a leguminous
RT weed Rhynchosia minima in India";
RL Virus Genes 42(3):407-414(2011).
XX
RN [2]
RP 1-2727
RA Jyothsna P., Malathi V.G.;
RT ;
RL Submitted (19-JUL-2010) to the INSDC.
RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute,
RL Pusa Campus, New Delhi, Delhi 110012, India
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FH Key Location/Qualifiers
FH
FT source 1. .2727
FT /organism="Rhynchosia yellow mosaic India virus"
FT /segment="DNA-A"
FT /host="Rhynchosia"
FT /isolate="Thiruvananthapuram"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collection_date="Oct-2009"
FT /clone="JRH1"
FT /note="acronym: RhYMIV"
FT /db_xref="taxon:935473"
FT gene 130. .489
FT /gene="AV2"
FT CDS 130. .489
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /db_xref="GOA:E7CWL1"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="UniProtKB/TrEMBL:E7CWL1"
FT /protein_id="ADU02156.1"
FT /translation="MIKMWDPLLNDFPKSRHGFRCMIAIKFLQACQEQYPNNSLGFEFL
FT RKLISNLRSKDHAKAELRYRLLITAISSSSKIELRQPNGTTCTCIQCPRHNKEKALDES
FT SDVEETTFLSIVSDT"
FT gene complement(222. .515)
FT /gene="AC5"
FT CDS complement(222. .515)
FT /codon_start=1
FT /gene="AC5"
FT /product="unknown"
FT /db_xref="UniProtKB/TrEMBL:E7CWL2"
FT /protein_id="ADU02161.1"
FT /translation="MDLHNHVEHQVSDTIDKNVVSSTSDDSSNAFSLLCLGHWMQVQVV
FT PLGCRSSIFDELLIAVMRRRYRNSALAWSLERKFEMSLRKNSNPNELLGYCS"
FT gene 299. .1072
FT /gene="AV1"
FT CDS 299. .1072
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:E7CWL3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E7CWL3"
FT /protein_id="ADU02157.1"
FT /translation="MPKRNYDTAFSSPLSVVRRRLNFDSPMALPAPASSAQGTTRRRRW
FT TNRPMWRKPRFYRLYRTPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITH
FT RVGKRFCVKSVYITGKVWMDENIKSKNHTNTVMFKLCRDRRPFGTPMDFGQVFNMYDNE
FT PSTATVKNDLRDRFQVLRRFNATVTGGQYACKEQAMVNRFYRVNNHVVYNHQEAAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVGN"
FT gene complement(1187. .1471)
FT /gene="AC3"
FT misc_feature complement(1187. .1471)
FT /gene="AC3"
FT /note="similar to replication enhancer protein; REn"
FT gene complement(1212. .1619)
FT /gene="AC2"
FT CDS complement(1212. .1619)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /note="TrAP"
FT /db_xref="GOA:E7CWL4"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E7CWL4"
FT /protein_id="ADU02159.1"
FT /translation="MRNSTPSKNHFSPPSIKAQHRCAKKKAIRRKRIDLKCGCSYYMHI
FT NCANHGFTHRGEHHCNSSTEWRIYLGDKKSPIFQDPRASQETVQQQQRHFDCPDQIQPQ
FT LKEGTGDSQMFFDLQNLDDLTASDWSFLKDI"
FT gene complement(1519. .2607)
FT /gene="AC1"
FT CDS complement(1519. .2607)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication initiation protein"
FT /note="Rep"
FT /db_xref="GOA:E7CWL5"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E7CWL5"
FT /protein_id="ADU02158.1"
FT /translation="MANSSRFKINAKNYFLTYPRCTLSKEAALEQLLAISTPVNKKFIR
FT ICRELHEDGIPHLHVLLQFEGKFQCKNQRFFDLHAETRSTYFHPNIQGAKSSSDVKKYM
FT EKDGDVVDHGEFQIDGRSSRGGKQSANDAYAEAINAGNTSEALVILKEKAPKDFVLYFH
FT NLAKNFDKIFEKSVPVYEPRYSIESFDNVPPYISSWAERNVKDSAARPERPISIVIEGD
FT SRTGKTTWARALGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNVKYGKPTMIKGGIPTIFLCNPGNKSSYKEFLDEEANASLKLWASKNAEFYTIKEPF
FT FTTVNQSATQVRQEESNSTQTN"
FT gene complement(2157. .2456)
FT /gene="AC4"
FT CDS complement(2157. .2456)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /note="unknown"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E7CWL6"
FT /protein_id="ADU02160.1"
FT /translation="MKMAFLTYMFCFNSKENSSAKTRGSSISMPKPGQHISIRTFRELK
FT VAQMLKNTWKKTETSLIMENSKLMVDQVEEVSNLQTTLMPKQSMQEIPLRRSLY"
XX
SQ Sequence 2727 BP; 737 A; 545 C; 581 G; 864 T; 0 other;
hm777508 Length: 2727 21-JUN-2011 Type: N Check: 9883 ..
1 acctgaggac ccgcgccggt gtacgaggcg tcttttgctt tatttacctt
51 tatgtcattc aaccaaatgc gctcctcagc gcttagatat tttaaatttg
101 aattataaac gtggggacta cgtaccccaa tgataaagat gtgggatcca
151 ttgttgaatg actttcccaa atcacggcat ggttttcggt gcatgattgc
201 cattaagttc ttgcaagcct gtcaagaaca atatcctaat aattcattgg
251 gatttgaatt tttgcgcaaa ctcatttcaa atttgcgctc caaggaccat
301 gccaaagcgg aattacgata ccgccttctc atcaccgcta tcagtagttc
351 gtcgaagatt gaacttcgac agcccaatgg cactacctgc acctgcatcc
401 agtgcccaag gcacaacaag gagaaggcgt tggacgaatc gtccgatgtg
451 gaggaaacca cgtttttatc gattgtatcg gacacctgat gttccacgtg
501 gttgtgaagg tccatgtaag gttcaatcct ttgaacaacg gcatgatatt
551 gcccatactg gcaaagtaat ttgcatttca gatgttactc gaggtaatgg
601 aattactcat cgtgttggga aacgtttctg tgtcaagtcc gtatatatta
651 ctggtaaggt ttggatggac gagaatatta agtccaaaaa ccatactaat
701 acggtcatgt ttaagttatg tcgtgacaga cgaccctttg ggactcctat
751 ggatttcggt caggtgttta atatgtatga taatgaacca agtactgcga
801 cagtgaagaa cgatcttcgt gatcgttttc aagttctgcg aagatttaat
851 gccacggtta caggtggcca atatgcatgc aaggagcaag ccatggttaa
901 ccgtttttat cgtgttaaca atcatgtggt ttataatcat caggaagctg
951 ccaaatatga aaatcatact gagaatgcgt tgttattgta tatggcatgt
1001 actcatgctt caaaccctgt gtatgcgaca ttaaagatca ggatctattt
1051 ctatgattct gttggaaatt aataaagatt gaattttatt tcattgtttt
1101 gttgcacctc aattgtgcct tcaaatacat tgtacattac atgatcgaca
1151 gatcgaataa cattattaat acaaagtacg cctaaactat tcagaaattg
1201 aaaactgaag cttaaatgtc tttaagaaaa gaccagtcgg aggccgtaag
1251 gtcgtccaaa ttttgaaggt caaaaaacat ttgtgaatcc ccagtgcctt
1301 ccttaagttg tggttgaatc tgatctggac agtcaaaatg tcgttgttgc
1351 tgttgaacgg tctcttgtga tgctcgagga tcttgaaata taggggattt
1401 tttatctccc agatatatac gccattctgt gcttgaattg cagtgatgtt
1451 ctcccctgtg cgtaaatcca tggttagcac agttaatgtg catataatat
1501 gagcagccgc acttgaggtc aattcgtttg cgtcgaattg ctttcttctt
1551 ggcgcacctg tgttgcgctt tgattgacgg tggtgaaaaa tggttctttg
1601 atggtgtaga attccgcatt cttggaagcc cacaatttta gtgatgcatt
1651 tgcttcctcg tcgaggaact ctttataaga agatttgttg cctgggttgc
1701 agagaaagat tgtggggata ccacctttaa tcattgtggg ctttccgtat
1751 ttgacgttac tttgccagtc acgttgtgcg cccatgaatt ctttgaaatg
1801 tttcaaataa tgcggatcga cgtcatcaat gacgttatac catgcatcgt
1851 tggaatacac tttcggacta aggtccaaat ggccgcagag ataattgtgc
1901 ggccccaatg cacgagccca tgtcgtcttc ccagtacgac tatcaccttc
1951 aatgacaatg ctaatcggtc tttctggccg cgcagcggaa tccttcacat
2001 ttctttccgc ccaagaagaa atgtacggtg gaacattatc gaatgattca
2051 attgaataac gaggttcata aactggaaca cttttttcaa aaattttatc
2101 aaaattctta gctaaattat gaaaatataa aacgaaatcc ttcggagcct
2151 tttcctttag tataacgagc gcctcagagg tatttcctgc attgattgct
2201 tcggcataag cgtcgtttgc agattgctta cctcctcgac ttgatcgacc
2251 atcaatttgg aattctccat gatcaacgac gtctccgtct ttttccatgt
2301 attttttaac atctgagcta cttttagctc cctgaatgtt cggatggaaa
2351 tatgttgacc tggtttcggc atggagatcg aagaacctct ggtttttgca
2401 ctggaatttt ccttcgaatt gaagcagaac atgtaagtga ggaatgccat
2451 cttcatgaag ttctctgcaa attcggatga atttcttgtt tacaggagtt
2501 gatatagcga gtaattgctc caaagcagct tcctttgaca gagtgcatct
2551 gggatatgta aggaaatagt tctttgcgtt tatcttgaaa cgactcgaat
2601 ttgccatatt gcaagtcgtt tttgtatcgg tgtacaccga ttgccttata
2651 gcgcctgtta ttggtgtatt ggagtcccat atataggagt ctcctaaaac
2701 cctctaacgg gtcctcagaa taatatt