Sequence of DPV Tobacco leaf curl virus

Tobacco leaf curl virus isolate COB1 pre-coat protein (AV2) gene, complete cds; and coat protein (AV1) gene, partial cds.

ACC No: HM856624

Dated: 2010-11-08 | Length: 489 | CRC: 1442160944

                
ID   HM856624; SV 1; linear; genomic DNA; STD; VRL; 489 BP.
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AC   HM856624;
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DT   08-NOV-2010 (Rel. 106, Created)
DT   08-NOV-2010 (Rel. 106, Last updated, Version 1)
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DE   Tobacco leaf curl virus isolate COB1 pre-coat protein (AV2) gene, complete
DE   cds; and coat protein (AV1) gene, partial cds.
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KW   .
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OS   Tobacco leaf curl virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
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RN   [1]
RP   1-489
RA   Saha A., Saha B., Saha D.;
RT   "Geminiviruses infecting cultivated tomato plants of sub-Himalayan plains
RT   of Eastern India: occurrence, detection, host range and diversity
RT   analysis";
RL   Unpublished.
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RN   [2]
RP   1-489
RA   Saha A., Saha B., Saha D.;
RT   ;
RL   Submitted (26-JUL-2010) to the EMBL/GenBank/DDBJ databases.
RL   Department of Botany, University of North Bengal, Siliguri, West Bengal
RL   734013, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .489
FT                   /organism="Tobacco leaf curl virus"
FT                   /host="Lycopersicon esculentum"
FT                   /isolate="COB1"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collection_date="12-Oct-2008"
FT                   /PCR_primers="fwd_seq: taatattacckgwkgvccsc, rev_seq:
FT                   tggacyttrcawggbccttcaca"
FT                   /db_xref="taxon:67762"
FT   gene            129. .485
FT                   /gene="AV2"
FT   CDS             129. .485
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="pre-coat protein"
FT                   /note="structural protein"
FT                   /protein_id="ADP44676.1"
FT                   /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL
FT                   ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICDPCCCPHCPRHQIKSMGEQAHEQ
FT                   KAEDVQDVQKSRCP"
FT   gene            289. .>489
FT                   /gene="AV1"
FT   CDS             289. .>489
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="structural protein"
FT                   /protein_id="ADP44677.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYVIRAAAPIVRVTKSRAWA
FT                   NRPMNRKPKMYRMYRSPDVPRG"
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SQ   Sequence 489 BP; 135 A; 116 C; 111 G; 127 T; 0 other;

hm856624 Length: 489  08-NOV-2010  Type: N  Check: 8428  ..

       1  gggtcgtgat aatattacaa agtgggcccc ttgatgtgat atgtcatcca
      51  atcagaacgc tcccccaaag cttaattgtc ttgtggtccc ttatttaaac
     101  ttgctcacca agtagtgcac tccgcactat gtgggatcca ttagtaaacg
     151  agtttcccga aaccgttcac ggctttaggt gtatgttagc agttaaatat
     201  ctgcagttag tagagaagac ttattcgcct gacacattag ggcacgattt
     251  aattagggat ttaatttcag ttattagggc tagaaattat gtcgaagcga
     301  ccagcagata taatcatttc cacgcccgct tcgaaggtac gccgccgtct
     351  caacttcgac agcccatatg tgatccgtgc tgctgccccc attgtccgcg
     401  tcaccaaatc aagagcatgg gcgaacaggc ccatgaacag aaagccgaag
     451  atgtacagga tgtacagaag tccagatgtc cctagagga