Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus isolate COB-2 pre-coat protein (AV2), coat protein (AV1), AC5 (AC5), AC3 (AC3), and AC2 (AC2) genes, complete cds.
ACC No: HM856625
Dated: 2010-11-08 | Length: 1684 | CRC: 1477722284
ID HM856625; SV 1; linear; genomic DNA; STD; VRL; 1684 BP.
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AC HM856625;
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DT 08-NOV-2010 (Rel. 106, Created)
DT 08-NOV-2010 (Rel. 106, Last updated, Version 1)
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DE Tomato leaf curl New Delhi virus isolate COB-2 pre-coat protein (AV2), coat
DE protein (AV1), AC5 (AC5), AC3 (AC3), and AC2 (AC2) genes, complete cds.
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KW .
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OS Tomato leaf curl New Delhi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-1684
RA Saha A., Saha B., Saha D.;
RT "Geminiviruses infecting cultivated tomato plants of sub-Himalayan plains
RT of Eastern India: occurrence, detection, host range and diversity
RT analysis";
RL Unpublished.
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RN [2]
RP 1-1684
RA Saha A., Saha B., Saha D.;
RT ;
RL Submitted (26-JUL-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Botany, University of North Bengal, Siliguri, West Bengal
RL 734013, India
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FH Key Location/Qualifiers
FH
FT source 1. .1684
FT /organism="Tomato leaf curl New Delhi virus"
FT /host="Lycopersicon esculentum"
FT /isolate="COB-2"
FT /mol_type="genomic DNA"
FT /country="India:West Bengal"
FT /collection_date="10-Nov-2009"
FT /PCR_primers="fwd_seq: acnggnnaaracnatgtgggc, rev_seq:
FT ggnaarathtggatgga"
FT /PCR_primers="fwd_seq: atgkcsaagcgwccrgcaga, rev_seq:
FT ttwaraatgtaawwkgagcag"
FT /note="PCR_primers=fwd_seq: taatattacckgwkgvccsc"
FT /db_xref="taxon:223347"
FT gene 72. .410
FT /gene="AV2"
FT CDS 72. .410
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /note="structural protein"
FT /protein_id="ADP44678.1"
FT /translation="MGDPLLREFPESVHGVRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHLFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ
FT KTQNIQNV"
FT gene 232. .1002
FT /gene="AV1"
FT CDS 232. .1002
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="structural protein"
FT /protein_id="ADP44679.1"
FT /translation="MVKRPADIIFSTPASKVRRRLNFDSPFGARAVVPIVRVTKAKAWT
FT NRPMNRKPRIYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGSGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVSKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(262. .747)
FT /gene="AC5"
FT CDS complement(262. .747)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /protein_id="ADP44680.1"
FT /translation="MHVLHRCCARFIVKHVKNFPKILWRSCRTTVTDQKKHDAVSMVFC
FT LDVFIHPYLPQHINRFHTKSLPYAMGESRSSGNITNTHDFANMRDIVPRFKGLHLTRAF
FT ASPWHVGTSIHSVYSGFSVHRPVGPGLCFCDADNGDNCTSSKGAVEVETSAYFRCGR"
FT gene complement(999. .1409)
FT /gene="AC3"
FT CDS complement(999. .1409)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3"
FT /note="replication enhancer protein"
FT /protein_id="ADP44681.1"
FT /translation="MITDSRTGESITADRAVSGVYTWEIRNPLYFKILKHNSRPFLRQH
FT DIINIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMVGVIGI
FT YNVIRAVYHVLDNVMEQTIDVCTSYDIKLDIY"
FT gene complement(1129. .1548)
FT /gene="AC2"
FT CDS complement(1129. .1548)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2"
FT /note="transcription activator protein"
FT /protein_id="ADP44682.1"
FT /translation="MQSLSHSKNHSNPVAKTSIPQETKESIRRRRSDLQLGCTYYISIN
FT CHDHGFTHRGVHHCGSSSEWRIYLGNSKSPVFQNFETQQQTLPKTARHHQYSNTIQPQP
FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNTGP"
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SQ Sequence 1684 BP; 476 A; 352 C; 387 G; 469 T; 0 other;
hm856625 Length: 1684 08-NOV-2010 Type: N Check: 6884 ..
1 tccacctaca agggttttgt tggggggggc ccaatttata ggcgcccccc
51 ccccaggttc aattcacaaa tatgggggat ccattattgc gcgaatttcc
101 agaaagcgtt catggtgtca ggtgcatgct agctgtaaaa tatctccaag
151 agatagaaaa gaactattcc ccagacacag tcggatacga tcttgtccga
201 gatctaattc ttgttcttcg agcaaagaac tatggtgaag cgaccagcag
251 atatcatctt ttcaacgccc gcatcgaaag tacgccgacg tctcaacttc
301 gacagcccct ttggagctcg tgcagttgtc cccattgtcc gcgtcacaaa
351 agcaaaggcc tggaccaaca ggccgatgaa cagaaaaccc agaatataca
401 gaatgtatag aagtcccgac gtgccaaggg gatgcgaagg cccttgtaag
451 gtgcagtcct ttgaatctag gcacgatgtc tctcatattg gcaaagtcat
501 gtgtgttagt gatgttaccc gaggatctgg actcacccat cgcgtaggga
551 agcgattttg tgtgaaatct gtttatgtgc tggggaagat atggatggat
601 gaaaacatca agacaaaaaa ccatactaac agcgtcatgt tttttttggt
651 ccgtgaccgt cgtcctacag gatctccaca agattttggg gaagttttta
701 acatgtttga caatgaaccg agcacagcaa cggtgaagaa catgcatcgt
751 gatcgttatc aagtcttacg gaagtggcat gctactgtga cgggaggaac
801 atatgcatct aaggagcaag cattagttag caagtttgtt agagttaata
851 attatgttgt gtataaccaa caagaggccg gcaagtatga gaatcatact
901 gaaaacgcat taatgttgta tatggcctgt actcatgcat caaatcctgt
951 gtatgctact ttgaaaatcc ggatctattt ctatgattcg gtaacaaatt
1001 aataaatatc gagttttata tcatatgaag tacatacatc aatcgtttgt
1051 tccattacat tatccaatac atgataaact gctcttatta cattataaat
1101 tcctattaca ccaaccatat ccaggtacct aaggacctgt gttttgaaga
1151 ctctcaagaa aatcccaatc tgagggcgta agcccgtcca gattttgaaa
1201 gttagaaaac acttgtgaag tcccagggct ttccgcaggt tgtggttgaa
1251 ttgtatttga atattgatga tgtcgtgctg tcttaggaag ggtctgctgt
1301 tgtgtttcaa aattttgaaa tacaggggat ttcgaatttc ccaggtatat
1351 acgccactca ctgctcgatc cgcagtgatg gactcccctg tgcgtgaatc
1401 cgtgatcatg gcagttgatc gatatgtaat acgtacaccc caactgcaga
1451 tcactccgcc tcctgcgaat gctctccttc gtctcctgtg ggatcgatgt
1501 tttcgcgacc ggattagagt ggttcttcga gtgtgataaa gactgcatcg
1551 tgatcgttat caagtcttac ggaagtggca tgctactgtg acgggaggaa
1601 catatgcatc taaggagcaa gcattagtta gcaagtttgt tagagttaat
1651 aattatgttg tgtataacca acaagaggcc ggca