Sequence of DPV Sida golden yellow vein virus
Sida golden yellow vein virus-[Jamaica:Liguanea2:2008] clone pLigA2 segment DNA-A, complete sequence.
ACC No: HQ009519
Dated: 2011-08-02 | Length: 2608 | CRC: 1757238171
ID HQ009519; SV 1; circular; genomic DNA; STD; VRL; 2608 BP.
XX
AC HQ009519;
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DT 13-DEC-2010 (Rel. 107, Created)
DT 02-AUG-2011 (Rel. 109, Last updated, Version 2)
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DE Sida golden yellow vein virus-[Jamaica:Liguanea2:2008] clone pLigA2 segment
DE DNA-A, complete sequence.
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KW .
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OS Sida golden yellow vein virus-[Jamaica:Liguanea2:2008]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2608
RX PUBMED; 21625977.
RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.;
RT "First report of the complete sequence of Sida golden yellow vein virus
RT from Jamaica";
RL Arch. Virol. 156(8):1481-1484(2011).
XX
RN [2]
RP 1-2608
RA Stewart C.S., Kon T., Gilbertson B.L., Roye M.E.;
RT ;
RL Submitted (02-AUG-2010) to the INSDC.
RL The Biotechnology Centre, The University of the West Indies, Mona Road,
RL Mona, St. Andrew Kgn 7, Jamaica
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FH Key Location/Qualifiers
FH
FT source 1. .2608
FT /organism="Sida golden yellow vein
FT virus-[Jamaica:Liguanea2:2008]"
FT /segment="DNA-A"
FT /host="Sida sp."
FT /mol_type="genomic DNA"
FT /country="Jamaica"
FT /collection_date="2008"
FT /clone="pLigA2"
FT /db_xref="taxon:929766"
FT misc_feature 15. .2461
FT /note="IR; contains sequences essential to the initiation
FT of replication"
FT gene 183. .938
FT /gene="CP"
FT CDS 183. .938
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /function="responsible for viral encapsidation"
FT /db_xref="GOA:E5KBZ0"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E5KBZ0"
FT /protein_id="ADR77520.1"
FT /translation="MTKRDSSWRSIGGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMY
FT RKPLIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI
FT KNDLRDRHQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVEYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(935. .1333)
FT /gene="REn"
FT CDS complement(935. .1333)
FT /codon_start=1
FT /gene="REn"
FT /product="replication enhancer"
FT /function="enhances replication"
FT /db_xref="GOA:E5KBZ1"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E5KBZ1"
FT /protein_id="ADR77523.1"
FT /translation="MVSRTGELITARQAENGVYIWEIENPLYFKIYWVEDQIYTRTRVY
FT HIQIRFNHNLRRALGLHKAYLNFQVWTTSMTASGSTYLARFGQLVNEYLYQLGVIGINN
FT VIRAVRFATAKPYVTHVLENHEIKFKFY"
FT gene complement(1080. .1469)
FT /gene="TrAP"
FT CDS complement(1080. .1469)
FT /codon_start=1
FT /gene="TrAP"
FT /product="transcriptional activator protein"
FT /function="may act as a gene silencing suppressor"
FT /db_xref="GOA:E5KBZ2"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E5KBZ2"
FT /protein_id="ADR77522.1"
FT /translation="MPNSSPSQPPSIKKAHRQSKRRAIRRRRIDLNCGCSIYFHINCTG
FT HGFTHRGTHHCTSGREWRVYLGDRKSPLFQDILGRGPDIHQNQSVPHTDTIQPQPEESV
FT GSPQSLPELPSLDDIDDSFWVNLFS"
FT gene complement(1381. .2466)
FT /gene="Rep"
FT CDS complement(1381. .2466)
FT /codon_start=1
FT /gene="Rep"
FT /product="replication-associated protein"
FT /function="responsible for replicating the genome"
FT /db_xref="GOA:E5KBZ3"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E5KBZ3"
FT /protein_id="ADR77521.1"
FT /translation="MPSIKRFKINAKNYFITYPGCSLTKEEALSQLLNLSTPVNKKFIK
FT ICRELHQNGKPHLHVPMQFEGKYACKNNRFFDLASPTRSAHFHPNIQGAKSSSDVKSYI
FT AKDGDTLEWGEFQIDGRSARGGCQSANDSYAKALNADSVESAMAVLKEEQPKDFVLQNH
FT NIRANLERIFAKAPEPWSPPFPLSSFNAVPDEMQAWSDGYFGTDAAARPERPVSIIIEG
FT DSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDVAPQYLKLKHWKELLGAQ
FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENTGLRNWTIKNAKFITLT
FT APLYQEGTQAIQEAGNQEAQD"
FT gene complement(2052. .2309)
FT /gene="AC4"
FT CDS complement(2052. .2309)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /function="may act in suppressing gene silencing"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E5KBZ4"
FT /protein_id="ADR77524.1"
FT /translation="MGSLISMCPCNSRENMHARITDSSIWPPQPGQHISIQTYRELNPA
FT PTSSPTSQRTEIHWNGENSRSTAEVLEEAASLLMIHMPRR"
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SQ Sequence 2608 BP; 634 A; 585 C; 619 G; 770 T; 0 other;
hq009519 Length: 2608 02-AUG-2011 Type: N Check: 5270 ..
1 accggatggc cgcgcgattt tttcgccctt tactttccac gcgcgctccg
51 cttttctcac tcgcgctatc gtccaatcat attgcgcctg ccgcgcttaa
101 ttaattcaaa caacttgggc cctaagttgt tgtctgggcc tataaaggaa
151 aagcggattt gggccacatt ctttaattca aaatgactaa gcgcgattca
201 tcttggcgct cgattggtgg aacctcaaag gttcgtcgca cgttgaattt
251 ctccccacgt ggaggtggtg gcccaaaaca gacacgggcc tcagaatggg
301 ttaacaggcc tatgtacagg aagcccttga tctatcggac tatacgaacg
351 cccgacgttc ccagaggttg tgaaggcccg tgcaaggtcc agtcctatga
401 acagcgtcat gatatctctc acgtcgggaa ggtgatgtgt atttctgatg
451 tcactcgtgg taatggtatt acccaccgtg tgggtaagcg tttttgtgtt
501 aagtctgtct atattttagg gaagatatgg atggatgaga acatcaagct
551 taagaaccac acgaacagtg tcatgttctg gttggtcagg gaccgtcgac
601 cctatggcac tcctatggat ttcggtcagg tgttcaacat gtatgacaat
651 gagcctagta cagctacgat caagaacgat ctccgtgatc gtcatcaggt
701 tatgcacagg ttctatggta aggtcacagg tggtcaatat gccagcaacg
751 agcaagcttt ggttaggcga ttctggaagg tcaacaatca tgtagagtac
801 aaccatcaag aagctgggaa atacgagaat catacggaga acgccttatt
851 attgtatatg gcatgtactc atgcctctaa ccccgtgtat gcgacattga
901 aaattcggat ctatttttat gattcgataa caaattaata aaatttaaat
951 tttatttcat gattttcaag cacatgagtt acatatggtt tggctgttgc
1001 aaaacgaaca gctctaatta cattgtttat tccaattaca cctaattggt
1051 acaagtactc atttactaat tgtccaaatc tagctaaata agttgaccca
1101 gaagctgtca tcgatgtcgt ccaaacttgg aagttcaggt aggctttgtg
1151 gagacccaac gctctcctca ggttgtggtt gaatcgtatc tgtatgtggt
1201 acactctggt tctggtgtat atctggtcct ctacccagta tatcttgaaa
1251 tagaggggat tttctatctc ccagatatac acgccattct ctgcctgacg
1301 tgcagtgatg agttcccctg tgcgtgaaac catgtcccgt gcagttgatg
1351 tggaagtaaa tggagcaccc gcaatttaga tcaatcctgc gcctcctgat
1401 tgcccgcctc ttggattgcc tgtgtgcctt cttgatagag gggggctgtg
1451 agggtgatga atttggcatt cttgatggtc cagttcctga gacctgtgtt
1501 ttcctctttg ttcaggaaat ctttatagct ggcaccctca ccaggattgc
1551 aaagcacgat tgatgggatc cctcctttaa tttgaactgg cttgccgtat
1601 ttgcaatttg actgccagtc cttctgggcc cccagaagtt ctttccagtg
1651 ctttagcttt agatattgcg gtgcgacgtc atcaatgacg ttatattcca
1701 cttcatttga aaagacccgg gaattgaagt ctaagtgtcc actgagataa
1751 ttgtgtgggc ctaaggcacg agcccacatc gtcttccctg tcctcgagtc
1801 gccttcaatt atgatactca caggcctctc cggccgcgca gcggcatctg
1851 ttccaaaata accgtctgac catgcttgca tctcgtctgg aacggcattg
1901 aaagaggaga ggggaaacgg aggagaccat ggctccggag ccttagcgaa
1951 tatcctttct aagttggcac ggatgttatg attctgcaaa acgaaatctt
2001 ttggctgttc ttcttttaaa accgccatgg cagattcaac ggaatctgca
2051 tttaacgcct tggcatatga atcattagca gactggcagc ctcctctagc
2101 acttctgccg tcgatctgga attctcccca ttccagtgta tctccgtcct
2151 ttgcgatgta ggacttgacg tcggagctgg atttagctcc ctgtatgttt
2201 ggatggaaat gtgctgacct ggttggggag gccagatcga agaatctgtt
2251 attcttgcat gcatattttc cctcgaattg catgggcaca tggagatgag
2301 gcttcccatt ttgatggagc tctctgcaaa ttttgatgaa cttcttattc
2351 actggcgtgg agaggtttag caattgggaa agtgcctctt ctttggtgag
2401 ggagcagcct ggataagtga taaaatagtt tttggcattt attttgaaac
2451 gtttaatcga tggcattttt gtaataataa gggggtcacc gattgaggct
2501 ctctcaaact tgctctagca attggggaac ggggtctcat ttatacaaga
2551 agcctcaata gaactctcaa tctcgttcgc acacgtggcg gccatccgca
2601 ataatatt