Sequence of DPV Cotton leaf curl Multan virus
Cotton leaf curl virus isolate Ganganagar-Rajasthan segment DNA-A, complete sequence.
ACC No: HQ158009
Dated: 2012-04-27 | Length: 2754 | CRC: 509329407
ID HQ158009; SV 1; circular; genomic DNA; STD; VRL; 2754 BP.
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AC HQ158009;
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DT 27-APR-2012 (Rel. 112, Created)
DT 27-APR-2012 (Rel. 112, Last updated, Version 1)
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DE Cotton leaf curl virus isolate Ganganagar-Rajasthan segment DNA-A, complete
DE sequence.
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KW .
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OS Cotton leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2754
RA Chakrabarty P.K., Sable S.V., Kalbande B.B., Chavhan R.L., Monga D.,
RA Koundal V., Kumar D., Pappu H.R.;
RT ;
RL Submitted (18-AUG-2010) to the INSDC.
RL Division of Crop Improvement, Central Institute for Cotton Research, Post
RL Bag No. 2, Shankar Nagar, P.O., Nagpur, Maharashtra 440010, India
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FH Key Location/Qualifiers
FH
FT source 1. .2754
FT /organism="Cotton leaf curl virus"
FT /segment="DNA-A"
FT /host="Gossypium hirsutum cv RST-2013"
FT /isolate="Ganganagar-Rajasthan"
FT /serotype="DC"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collected_by="P.K. Chakrabarty, Suchitra Sable and Dilip
FT Monga"
FT /collection_date="Aug-2009"
FT /db_xref="taxon:53010"
FT gene complement(76. .807)
FT /gene="AC5"
FT CDS complement(76. .807)
FT /codon_start=1
FT /gene="AC5"
FT /product="ac5 protein"
FT /protein_id="AEI52870.1"
FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISNQEKHHTIRVILR
FT LNVLIHPYLTQHINRLDTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF
FT TSSRNIWTSVHPVHPGLPVHRPVCPCLLFCDADNGGSSTAGVWAAEVQTPAYFRRGRRN
FT DDIGSSLRHNYGSVKYKLNPVLTRTQAYPVNNPATKVANISQKAYTETREPYQGIRLIV
FT DPTCLNLKLSAQVLIVCGSVI"
FT gene 132. .488
FT /gene="AV2"
FT CDS 132. .488
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat/movement protein"
FT /protein_id="AEI52864.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT ICILRSRSYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT EAQDVQDVQKSRCS"
FT gene 292. .1062
FT /gene="AV1"
FT CDS 292. .1062
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEI52865.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1065. .1469)
FT /gene="AC3"
FT CDS complement(1065. .1469)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="ren"
FT /protein_id="AEI52866.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKNQVLKYLNNLGVISINL
FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLY"
FT gene complement(1162. .1614)
FT /gene="AC2"
FT CDS complement(1162. .1614)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEI52867.1"
FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH
FT AESSGTAQVFSNLPNLDDLTASDWSFLKGIQKPSPQISEQSRCNFN"
FT gene complement(1511. .2599)
FT /gene="AC1"
FT CDS complement(1511. .2599)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication initiator protein"
FT /protein_id="AEI52868.1"
FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI
FT CRELHEDGTPHLHVLIQFEGNFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYTE
FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN
FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISVVIEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVNPHYLKHFKEFMGAQKDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY
FT SGTNQSTAQGSEEAQQEEESRS"
FT gene complement(2143. .2445)
FT /gene="AC4"
FT CDS complement(2143. .2445)
FT /codon_start=1
FT /gene="AC4"
FT /product="ac4 protein"
FT /protein_id="AEI52869.1"
FT /translation="MGLLTCMFSSSSKGISSARICDSSTWSPQAGQHISIRTYRELNPA
FT PTSNPTPRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN"
XX
SQ Sequence 2754 BP; 734 A; 556 C; 630 G; 834 T; 0 other;
hq158009 Length: 2754 27-APR-2012 Type: N Check: 6854 ..
1 accggatggc cgcgcgattt ttttggtggg ccttaccatt aacacttgtc
51 ggccaatcat atgactccct caaagctaaa taacgctccc gcacactata
101 agtacttgcg cactaagttt caaattcaaa catgtgggat ccactattaa
151 acgaattccc tgatacggtt cacgggtttc ggtgtatgct ttctgtgaaa
201 tatttgcaac ttttgtcgca ggattattca ccggatacgc ttgggtacga
251 gttaatacgg gatttaattt gtattttacg ctcccgtagt tatgtcgaag
301 cgagctgccg atatcgtcat ttctacgccc gcgtcgaaag tacgccggcg
351 tctgaacttc ggcagcccat acaccagccg tgctgctgcc cccattgtcc
401 gcgtcacaaa acaacaggca tggacaaaca ggcctatgaa caggaagccc
451 aggatgtaca ggatgtacag aagtccagat gttcctagag gatgtgaagg
501 tccatgtaag gttcagtcgt ttgagtccag acatgatatt cagcatatag
551 gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat
601 agagttggta agagattttg tgtcaagtct gtttatgtgt tgggtaagat
651 atggatggat gagaacatta agacgaagaa tcacacgaat agtgtgatgt
701 ttttcttggt tagagatcgt agacctgttg ataaacctca agattttgga
751 gaggtattta atatgtttga taatgagccc agtacggcga ctgtgaagaa
801 tgttcatcgt gataggtatc aagttctgcg caaatggtat gcaactgtca
851 ccggtggaca atacgcttca aaggaacagg ctttggtcaa gaagtttgtc
901 agagttaaca attatgttgt ttacaatcaa caggaagcag gaaaatacga
951 gaatcatacg gaaaatgcgt taatgcttta tatggcttgt actcacgcta
1001 gcaaccctgt ttatgctacg ttgaagatta ggatatattt ttatgactct
1051 gtaacgaatt gatattaata aagtttaaat tttatttctg aatattgatc
1101 tacatacata gtttgttgga ttacattgta caatacatgt tctacagctt
1151 taataactaa attaattgaa attacaccga gattgttcag atatttgagg
1201 acttggtttt tgaataccct taagaaaaga ccagtctgag gctgtaaggt
1251 cgtccagatt cggaaggtta gaaaacactt gtgcagtccc agagctttcc
1301 gcgtgttgta gttgaactgg atcctgatcg tgagtatgtc catattcgtc
1351 gtgaatggac ggttgacgtg gctgatgatc ttgaaataaa ggggatttgg
1401 aacctcccag atatatgcgc cattccctgc ttgagctgca gtgatgggtt
1451 cccctgtgcg tgaatccatg gttgtggcag ttgattgaca gataataaga
1501 acacccgcat tcaagatcta ctctcctcct cctgttgcgc ctcttcgctt
1551 ccctgtgctg tactttgatt ggtacctgag tacatgggtc tatcaagtgt
1601 gatgaagatc gcattcttta aagcccaatt ttttagtgca gaattcttct
1651 cttcatccaa aaactcttta tagctagaat tgggtcctgg attgcagagg
1701 aagatggtgg gaattccgcc tttaatttga actggcttcc cgtattttgt
1751 atttgattgc cagtcctttt gggcccccat gaactcctta aagtgcttta
1801 ggtaatgtgg gttgacgtca tcaatgacgt taaaccaggc gtcattactg
1851 tatacccttg ggctcagatc tagatgtcca cacagataat tatgtggacc
1901 taatgatctg gcccacatcg tcttccccgt cctactgtca ccctcaatca
1951 ctacacttat tggtctattg gcccgcgcag cggcactgac gacgttctcg
2001 gcagcccaca cttcaagttc ttctggaact tgatcgaaag aagaagagga
2051 aaaaggagaa acataaggag ctggtggctc ctgaaagatt ctgtctagat
2101 ttgcatttaa attatgaaat tgcagtacaa aatccttagg agctagttcc
2151 ttaatgactc taagagcctc cgacttactt cccgcgttaa gtgctgcggc
2201 gtaagcgtca ttggctgtct gttgccctcc tcttgctgac cttccgtcga
2251 tctgaaattg cccccagtcg agaatgtccc cgtccttctc ggtgtaggat
2301 ttgacgtcgg agctggattt agctccctgt atgttcggat ggaaatgtgc
2351 tgacctgctt ggggagacca agtcgaagaa tcgcatattc tggcacttga
2401 aattcccttc gaactggatg agaacatgca agtgaggagt cccatcttcg
2451 tgaagctctc tgcagattct aatatatttt tttgaagttg gggtttgtat
2501 atttaataat tgggaaagtg cttcctcttt ggtgagagaa catttgggat
2551 aagtgatgaa atagtttttg gaataaatac cgttccgctt tggaggcatg
2601 ttgactaaaa ttgatcaccg attgaccgct cttgcaactc tccccggtat
2651 atcggtgatc aatatatagt gatcaccaaa tggcataatg gtaataaaaa
2701 aactttaatt tgaaattcaa accaaaaggc taaagcggcc atccgtttaa
2751 tatt