Sequence of DPV Tomato leaf curl Hanoi virus
Tomato leaf curl Hanoi virus isolate Vietnam/Hanoi/tomato/2010, complete genome.
ACC No: HQ162270
Dated: 2011-02-03 | Length: 2740 | CRC: -1834615580
ID HQ162270; SV 1; circular; genomic DNA; STD; VRL; 2740 BP.
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AC HQ162270;
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DT 03-FEB-2011 (Rel. 107, Created)
DT 03-FEB-2011 (Rel. 107, Last updated, Version 1)
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DE Tomato leaf curl Hanoi virus isolate Vietnam/Hanoi/tomato/2010, complete
DE genome.
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KW .
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OS Tomato leaf curl Hanoi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2740
RA Ha C.V., Le H.V., Tran T.N.;
RT "Identification of begomoviruses in Vietnam";
RL Unpublished.
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RN [2]
RP 1-2740
RA Ha C.V., Le H.V., Tran T.N.;
RT ;
RL Submitted (19-AUG-2010) to the EMBL/GenBank/DDBJ databases.
RL Research Centre for Tropical Plant Diseases, Hanoi University of
RL Agriculture, Trauqui - Gialam, Hanoi, Vietnam
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FH Key Location/Qualifiers
FH
FT source 1. .2740
FT /organism="Tomato leaf curl Hanoi virus"
FT /host="tomato"
FT /isolate="Vietnam/Hanoi/tomato/2010"
FT /mol_type="genomic DNA"
FT /country="Viet Nam"
FT /collection_date="2010"
FT /note="sample 100"
FT /db_xref="taxon:971271"
FT gene 128. .478
FT /gene="AV2"
FT CDS 128. .478
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="ADW24236.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGHDLIRDL
FT ILVIRARDYVEATRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESAHV
FT PKAQDVPNVQKP"
FT gene 288. .1061
FT /gene="AV1"
FT CDS 288. .1061
FT /codon_start=1
FT /gene="AV1"
FT /product="CP protein"
FT /protein_id="ADW24235.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSW
FT VNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTH
FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRIQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1058. .1462)
FT /gene="AC3"
FT CDS complement(1058. .1462)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn protein"
FT /protein_id="ADW24239.1"
FT /translation="MDSRTGEAITAAQAESGVYIWTVKNPLYFKITSHDERPFLTNHDI
FT ITIQVQFNYNLRKALGIHQCFLICRVWTRLHPQTSRFLRVFKYQCIKYLDNLGVISINN
FT VIRAMSHVLYNVLEGTIDTEDSSIIKFNLY"
FT gene complement(1203. .1607)
FT /gene="AC2"
FT CDS complement(1203. .1607)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP protein"
FT /protein_id="ADW24238.1"
FT /translation="MRSSSPSKAHSTPVPIKVQHRNAKKATRRRRVDLPCGCSYFIALG
FT CHNHGFSHRGSYHCSSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQP
FT EESIGDTPMFSNLPSLDSFTSSDLAFLKSI"
FT gene complement(1510. .2595)
FT /gene="AC1"
FT CDS complement(1510. .2595)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep protein"
FT /protein_id="ADW24237.1"
FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPTNKLFIR
FT ICRELHEDGSPHLHVLIQFEGKFQCRNQRFFDLISQTRSAHFHPNIQGAKSSTDVKTYM
FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFH
FT NLNSNLDRIFTPPIEEYISPFSSSSFDQVPEELDEWAIENVVSAAARPLRPVSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWAIKNAIFVTLQGTL
FT YSGSYQGATPQRQESYEETES"
FT gene complement(2145. .2438)
FT /gene="AC4"
FT CDS complement(2145. .2438)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ADW24240.1"
FT /translation="MGLLTCMSSSNSKESSNAEIKDSSTSYPKQGQHISIRTFRELKAQ
FT QMLKHTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKHRPSIY"
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SQ Sequence 2740 BP; 731 A; 546 C; 608 G; 855 T; 0 other;
hq162270 Length: 2740 03-FEB-2011 Type: N Check: 3408 ..
1 accggatggc cgcgattttt tttaaagtgg tccccgcatg cgctcctgcc
51 caatcctatc cactcctcaa agctaaatta ttaatttgtc tcctatataa
101 cttggtcccc aagtagtcac gtcaaacatg tgggatcctt tactaaacga
151 gtttcccgaa acggtacatg gtttcaggtg tatgctagca attaagtatt
201 tgcaattggt agaaaatacg tactctccag atacattagg gcacgattta
251 attcgcgatt taattttagt tattcgtgct agagattatg tcgaagcgac
301 ccgccgatat agtcatttcc actcccgcat ccaaggtgcg tcgccggctg
351 aatttcgaca gcccgtatgt cagccgtgct gctgccccca ctgtcctcgt
401 cacaaacaaa aggaggtcat gggtgaatcg gcccatgtac cgaaagccca
451 ggatgtaccg aatgtacaaa agccctgatg ttcctcgtgg ttgtgaggga
501 ccatgtaagg tccagtcgta tgaacagcgt catgatgtag ctcacgtagg
551 taaggtcatt tgtgtgtcgg atgttactcg tggtaatggt ttgacgcatc
601 gagtcggtaa gaggttttgt gttaaatctg tctatgtttt gggtaagata
651 tggatggatg agaacattaa gaccaagaat cataccaata cagttatgtt
701 ttttctagtt cgtgatagga gaccttttgg cactccccag gattttggcc
751 aggtgtttaa catgtatgat aatgagccga gtacagctac tgtgaagaat
801 gacaacaggg atcgttttca agttctccgc cgtattcaag ccactgttac
851 tggtggccag tatgcaagta aggagcaagc aatagtcagg aaattcatga
901 aggtgaataa ccatgtaact tataaccatc aagaggctgc gaagtatgat
951 aaccacacag aaaatgcttt gttattgtat atggcatgta ctcatgctag
1001 taatccagtg tatgctactt tgaagatcag gatctatttc tacgattctg
1051 ttcagaatta ataaagatta aattttatta tacttgaatc ttctgtatca
1101 attgtgcctt ctaatacatt gtacaataca tgagacattg ctctaattac
1151 attattgatg ctaataactc ctaaattgtc taaatactta atacattgat
1201 atttaaatac tcttaagaaa cgcgaggtct gaggatgtaa acgagtccaa
1251 actcggcaga ttagaaaaca ttggtgtatc cccaatgctt tcctcaggtt
1301 gtaattgaat tggacttgta ttgtgatgat gtcgtggttc gtcagaaatg
1351 gtctctcgtc gtggctggtt atcttgaaat ataggggatt tttgaccgtc
1401 cagatatata cgccactctc tgcttgagct gcagtgatag cttcccctgt
1451 gcgagaatcc atgattgtga cagcctagtg caatgaagta tgaacatcca
1501 caagggagat caactctccg tctcctcgta gctttcttgg cgttgcggtg
1551 ttgcaccttg ataggaaccg gagtagagtg tgccttggag ggtgacgaag
1601 atcgcattct ttattgccca gtttttaagt gcgctgtttt tttcttcgtc
1651 caagaattct ttatagctgg aattggggcc aggattgcag aggaagatag
1701 tgggaatacc gcctttaatt tgaacaggtt tcccgtactt cgtgttgctt
1751 tgccagtccc tttgggcccc catgaattct ttaaagtgct ttaggtaatg
1801 cggatccacg tcatcgatga cgttgaacca ggcatcatta ctgtacacct
1851 ttggactcaa atctaaatga ccacataaat aattgtgtgg acccaatgat
1901 cgggcccaca tcgtcttccc cgtcctgcta tcaccctcta tgactatact
1951 tactggtctc aaaggccgcg cagcggcact gacaacgttt tctatagccc
2001 attcatcaag ttcttcagga acctggtcaa aagaagaaga agaaaatgga
2051 gaaatatatt cctctattgg aggagtaaaa atcctatcta aattactatt
2101 taaattatgg aattgtaaaa caaaatcttt aggagctttc tcccttaata
2151 tattgagggc cgatgctttg gaccctgaat tgattgcctc ggcatatgcg
2201 tcgttggcag attggcaacc tcctctagcc gatcttccat cgatctggaa
2251 aactccatga tcaagcacgt ctccgtcttt ttccatgtat gttttaacat
2301 ctgttgagct tttagctccc tgaatgttcg gatggaaatg tgctgacctt
2351 gtttgggata tgaggtcgaa gaatctttga tttctgcatt ggaactttcc
2401 ttcgaattgg atgaggacat gcaagtgagg agacccatct tcgtgtaatt
2451 ccctgcagat tcgaatgaat aatttatttg ttggggtttc taaggcttta
2501 atttgggaaa gtgcttcttc tttggtgaga gaacagtgtg ggtatgtgag
2551 gaaatagttt ttggcattta ttctgaattt attgggagga gccattgact
2601 ggtcaatcgg tgtctctcaa acttggctat gcaattggtg tctggggtct
2651 tatttatatg tggacaccaa atggcattaa tgtaattatg attatgaaat
2701 tcaaaattca aattccaaaa gcggccatcc gtataatatt