Sequence of DPV Sugarcane yellow leaf virus

Sugarcane yellow leaf virus isolate CHN-GD-GZ10-3,coat protein and movement protein mRNA,complete cds;putative aphid transmission factor mRNA,partial cds.

ACC No: HQ245326

Dated: 2011-06-07 | Length: 1284 | CRC: -1145473109

                
ID   HQ245326; SV 1; linear; genomic RNA; STD; VRL; 1284 BP.
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AC   HQ245326;
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DT   07-JUN-2011 (Rel. 109, Created)
DT   07-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Sugarcane yellow leaf virus isolate CHN-GD-GZ10-3,coat protein and movement
DE   protein mRNA,complete cds;putative aphid transmission factor mRNA,partial
DE   cds.
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KW   .
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OS   Sugarcane yellow leaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
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RN   [1]
RP   1-1284
RA   Wang M., Xu D., Zhou G., Li R.;
RT   "Evaluation of genetic diversity of Sugarcane yellow leaf virus in China by
RT   RT-PCR-RFLP analysis and nucleotide sequencing of viral genome";
RL   Unpublished.
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RN   [2]
RP   1-1284
RA   Wang M., Xu D., Zhou G., Li R.;
RT   ;
RL   Submitted (10-SEP-2010) to the INSDC.
RL   College of Natural Resources and Environment, Plant Pathology, Laboratory
RL   of Plant Virology, South China Agricultural University, Tianhe, Wushan,
RL   Guangzhou, Guangdong 510642, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1284
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum hybrid cultivar CP93-1634"
FT                   /isolate="CHN-GD-GZ10-3"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="leaf"
FT                   /collection_date="Jan-2009"
FT                   /db_xref="taxon:94290"
FT   CDS             31. .>1284
FT                   /codon_start=1
FT                   /transl_except=(pos:619. .621,aa:OTHER)
FT                   /product="putative aphid transmission factor"
FT                   /note="produced by translational readthrough of TAG stop
FT                   codon of ORF 3"
FT                   /protein_id="AEG89018.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT                   GDAVRGPGGRSNRDVLTFTIDDLKASSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNTCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVDDAPPTPIPQPTPPAPAPAPAPKY
FT                   FGYQGVPNNIIKTRGNSEYLDVGQLDSVTMYLWKDESWSIEKLSAGYRVNNRDRAIPYL
FT                   LIPVEKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFICDNVNLQGWRAYAYTGCSISNYK
FT                   TADSNVPGLPDMRVNNCSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV
FT                   SYANFTEKIMEWGSVSIAI"
FT   CDS             31. .621
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /protein_id="AEG89016.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT                   GDAVRGPGGRSNRDVLTFTIDDLKASSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNTCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT   CDS             62. .514
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /protein_id="AEG89017.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLTISRPAQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLQASPSRGTPRKPSRPPSSGGKIS"
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SQ   Sequence 1284 BP; 371 A; 328 C; 298 G; 287 T; 0 other;

hq245326 Length: 1284  07-JUN-2011  Type: N  Check: 60  ..

       1  aaatcagtgc acatatccga gcgattgtta atgaatacgg gcgctaaccg
      51  ctcacgaagg aatgtcagaa gacgcgctaa ccgtcgtcga cagactcggc
     101  cagtggtcgt ggtccggcct gccgcaggac ctagacgagt acgacgacgt
     151  agagcacgtg ttggaggaga cgctgtgcga ggaccgggag gaagaagcaa
     201  cagggatgtt ctcactttca cgattgacga tctcaaggcc agctcaaccg
     251  ggatcctcaa attcggaccg aacttatctc agtacgcagc gttcaacaat
     301  ggcttactca aagcctacca tgagtataaa atcacaagtc tcactattca
     351  gtataacaca tgctcctccg acgcaactcc aggtgcaatc gcacttgaag
     401  tggatacatc ctgctcccaa acaacaacag gctccaagat tacaagcttc
     451  cccgtcaaga ggaacgccaa gaaaaccttc ccggccccct tcatcagggg
     501  gaaagatttc atgactacat cagctgatca gttctggctt ttgtacaaag
     551  ggaatgggga cggaagccta gcaggacaat tcgtctgccg atttgaatgt
     601  ttattccaga atcccaaata ggtagacgac gctcccccaa cacccatacc
     651  acaaccaacc ccacccgccc cggccccggc accagcacct aaatattttg
     701  gatatcaagg tgtgccgaac aacatcatca aaactcgagg taactcagag
     751  tatcttgatg tgggccaact cgatagcgtg accatgtacc tttggaaaga
     801  tgaatcatgg agcatcgaga aactgtcagc cggataccga gtcaacaatc
     851  gcgaccgtgc cataccttat ctcctcattc ctgtggagaa aggaaaatac
     901  tccgtgttca tacaatgtga gggctttaag gcagtaaaag ccaaaggagg
     951  cacgaatgac ggcaaaatga gcgggtttat ttgcgacaat gtaaatcttc
    1001  agggttggag agcgtacgca tatactgggt gttcaatctc taattacaag
    1051  acagctgact caaatgtccc cggtcttcca gacatgagag taaacaactg
    1101  ttcttttacc gaccagttgg tcgagagaga tttttcttgt tcatttcacc
    1151  tcgaggtgcc tcaacaaggc tattttggtc tagaggcccc acccattgaa
    1201  aagagtgatc atttcaattt cgtggtgtct tacgctaatt tcactgagaa
    1251  aatcatggaa tggggatcag tctccatagc gata