Sequence of DPV Sugarcane yellow leaf virus

Sugarcane yellow leaf virus isolate CHN-GD-ZJ10,coat protein and movement protein mRNA,complete cds;putative aphid transmission factor mRNA,partial cds.

ACC No: HQ245335

Dated: 2011-06-07 | Length: 1284 | CRC: -60919610

                
ID   HQ245335; SV 1; linear; genomic RNA; STD; VRL; 1284 BP.
XX
AC   HQ245335;
XX
DT   07-JUN-2011 (Rel. 109, Created)
DT   07-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Sugarcane yellow leaf virus isolate CHN-GD-ZJ10,coat protein and movement
DE   protein mRNA,complete cds;putative aphid transmission factor mRNA,partial
DE   cds.
XX
KW   .
XX
OS   Sugarcane yellow leaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1284
RA   Wang M., Xu D., Zhou G., Li R.;
RT   "Evaluation of genetic diversity of Sugarcane yellow leaf virus in China by
RT   RT-PCR-RFLP analysis and nucleotide sequencing of viral genome";
RL   Unpublished.
XX
RN   [2]
RP   1-1284
RA   Wang M., Xu D., Zhou G., Li R.;
RT   ;
RL   Submitted (10-SEP-2010) to the INSDC.
RL   College of Natural Resources and Environment, Plant Pathology, Laboratory
RL   of Plant Virology, South China Agricultural University, Tianhe, Wushan,
RL   Guangzhou, Guangdong 510642, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1284
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum hybrid cultivar"
FT                   /isolate="CHN-GD-ZJ10"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="leaf"
FT                   /collection_date="Aug-2008"
FT                   /db_xref="taxon:94290"
FT   CDS             31. .>1284
FT                   /codon_start=1
FT                   /transl_except=(pos:619. .621,aa:OTHER)
FT                   /product="putative aphid transmission factor"
FT                   /note="produced by translational readthrough of TAG stop
FT                   codon of ORF 3"
FT                   /protein_id="AEG89045.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKRVFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY
FT                   FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRGRAIPFV
FT                   LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR
FT                   TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV
FT                   SYANFTDKILEWGSISVAI"
FT   CDS             31. .621
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /protein_id="AEG89043.1"
FT                   /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT                   GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT                   TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKRVFPAPFIRGKDFMTT
FT                   SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT   CDS             62. .514
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /protein_id="AEG89044.1"
FT                   /translation="MSEDALTVVDRLGQWSWSGHPQDLDEYDDVEHVLEETLCEDREEE
FT                   ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT                   QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRESSRPPSSGGKIS"
XX
SQ   Sequence 1284 BP; 358 A; 332 C; 307 G; 287 T; 0 other;

hq245335 Length: 1284  07-JUN-2011  Type: N  Check: 2792  ..

       1  aaatcagtgc acacatccga gcgatagtga atgaatacgg gcgctaaccg
      51  ctcacgaagg aatgtcagaa gacgcgctaa ccgtcgtaga cagactcggc
     101  cagtggtcgt ggtccgggca cccccaggac ctagacgagt acgacgacgt
     151  agagcacgtg ttggaggaaa cgctgtgcga ggaccgggag gaagaagcaa
     201  ccgggatgtt ctcactttca cggttgacga tctcaaagcc aactcaaccg
     251  ggatcctcaa attcggaccg aacttatctc agtacgcagc gttcaacaat
     301  ggcttactca aagcctacca tgagtataaa atcacaagtc tcactattca
     351  gtataactca tgctcctccg acgcaactcc aggtgcaatc gcacttgaag
     401  tggatacatc ctgctcccaa acaacaacag gctccaagat tactagcttc
     451  cccgtcaaga ggaacgccaa gagagtcttc ccggccccct tcatcagggg
     501  gaaagatttc atgactacgt cagctgacca gttttggttg ctgtacaaag
     551  ggaatggaga ctcgagccta gcaggacaat tcgtctgccg atttgaatgc
     601  cttttccaga atcccaaata ggtaggcgac gctcccccaa cacccacccc
     651  aacaccaacc ccacccgctc cgaccccggc accggctccc aagtattttg
     701  gataccaagg agtgccgaac aacatcgtga aaacaagagg aaactctgaa
     751  tatctagatg tgggtccgct cgaaaatgtg accatgtatc tttggaaaga
     801  cgaatcgtgg agcattgagc aactgtcagc cggatatcgc gttaacaatc
     851  gaggacgtgc catacccttt gtcctctttc cagtggataa aggcaagtac
     901  tccgtgttta tacaatgtga gggctttaag gcagttaaag ccaaaggagg
     951  cacgaacgac ggcaagatga gcgggtttct ttgtgacaat gcaaatctcg
    1001  cgggttggcg agcatacgca tatagtgggt gtacaatctc taattataga
    1051  acatcggact ctaatgttcc tggtcacccg gacatgaaag tcaatggtgg
    1101  atcttttacc gaccaattgg tcgagagaga tttttcttgt tcatttcacc
    1151  tcgaggtgcc tcaacaaggc tactttggcc tagaggcccc acccattgaa
    1201  aagagtgatc atttcaattt tgtggtgtct tacgctaact tcactgataa
    1251  aatcctggaa tggggttcaa tctccgtagc gata