Sequence of DPV Sugarcane yellow leaf virus

Sugarcane yellow leaf virus isolate CHN-GX-YZ1 P0 RNA silencing suppressor gene, complete cds; and multifunctional protein gene, partial cds.

ACC No: HQ245358

Dated: 2011-06-07 | Length: 1559 | CRC: 1229342784

                
ID   HQ245358; SV 1; linear; genomic RNA; STD; VRL; 1559 BP.
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AC   HQ245358;
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DT   07-JUN-2011 (Rel. 109, Created)
DT   07-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Sugarcane yellow leaf virus isolate CHN-GX-YZ1 P0 RNA silencing suppressor
DE   gene, complete cds; and multifunctional protein gene, partial cds.
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KW   .
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OS   Sugarcane yellow leaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
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RN   [1]
RP   1-1559
RA   Wang M., Xu D., Zhou G., Li R.;
RT   "Evaluation of genetic diversity of Sugarcane yellow leaf virus in China by
RT   RT-PCR-RFLP analysis and nucleotide sequencing of viral genome";
RL   Unpublished.
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RN   [2]
RP   1-1559
RA   Wang M., Xu D., Zhou G., Li R.;
RT   ;
RL   Submitted (10-SEP-2010) to the INSDC.
RL   College of Natural Resources and Environment, Plant Pathology, Laboratory
RL   of Plant Virology, South China Agricultural University, Tianhe, Wushan,
RL   Guangzhou, Guangdong 510642, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1559
FT                   /organism="Sugarcane yellow leaf virus"
FT                   /host="Saccharum hybrid cultivar Yunrui99-601"
FT                   /isolate="CHN-GX-YZ1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="leaf"
FT                   /collection_date="Dec-2008"
FT                   /db_xref="taxon:94290"
FT   CDS             1. .771
FT                   /codon_start=1
FT                   /product="P0 RNA silencing suppressor"
FT                   /note="ORF0"
FT                   /protein_id="AEG89102.1"
FT                   /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT
FT                   YQDPLTRHLVQDYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV
FT                   LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFFERG
FT                   YDTFRSVLGVHLLEHERFVSRILEQPIMGPDQAVRLCFHYHNALDHDDDDSGLETDFDN
FT                   LSLGRPYINGLPPNEKIIFIHSNLVGRSTYSHDI"
FT   CDS             176. .>1559
FT                   /codon_start=1
FT                   /product="multifunctional protein"
FT                   /note="ORF1"
FT                   /protein_id="AEG89103.1"
FT                   /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL
FT                   SFYGLPAINSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWRDCKTFSRE
FT                   ATTLSDRFLEYTFSNTKGLLVEFLNNLLWDLIKLYVYAFTIITRLIMTMTILAWKPILI
FT                   ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRGDEKMVQRFK
FT                   SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSAHCISDSFKVRSFRNGI
FT                   KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM
FT                   MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP
FT                   VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA
FT                   EEE"
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SQ   Sequence 1559 BP; 398 A; 375 C; 362 G; 424 T; 0 other;

hq245358 Length: 1559  07-JUN-2011  Type: N  Check: 9567  ..

       1  atgcttttca acgaattctc tgttgaggga attaaattca gagcacacga
      51  aagcacttca cccgtctttc gtggggaggt ttccaggtgt ttgacctact
     101  acagagtctt cgcctgcaag tgggttgagt tgacctatca agatccactc
     151  acacgccatc tagtacaaga ttactatggc cccaacactc ccgtttacaa
     201  ctggctggag cacatacgcc ttattgttgt cactatggtg cctattctgc
     251  tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac
     301  ctccagtctg tccttttatg gcttgcccgc aataaactct actatagagt
     351  taagagatgc cgttccaagc ggtttgtact cgagcaagat cacatcggcc
     401  ccgaactttt ccgaactcag ctactccagt atgctgggtt ggatgttttt
     451  caagatgtgg cgcgattgca agactttttc gagagaggct acgacacttt
     501  ccgatcggtt cttggagtac accttctcga acacgaaagg tttgttagtc
     551  gaattcttga acaacctatt atgggacctg atcaagctgt acgtttatgc
     601  tttcactatc ataacgcgct tgatcatgac gatgacgatt ctggcctgga
     651  aaccgatttt gataatctgt ctcttggtcg tccttacatc aatggtctac
     701  cacctaatga gaaaattatt ttcattcatt caaatttggt gggtcgtagc
     751  acctattctc atgatatata ggaccgtcac gtacattcac agaaggttgt
     801  tcgcttcacg tggggacgag aaaatggtcc aacgtttcaa aagctttgcc
     851  gtccccatgt caccaccagg acactcagtg cttgagatag tacaccccga
     901  tgattctcac atgggatatg catcctgtgt tcgattgaaa aacggggaag
     951  aggctctcat gacatccgct cactgcataa gcgattcttt caaggttcgc
    1001  tcgttcagga atggtatcaa gatccctcta acggaattcc aagtgctgtt
    1051  gcccgccaat gcgatggaca ttgttcttct tcgaggccca cctgagtgga
    1101  agtccatcct tggagccaaa gcagcccact tcactccagt caaccagctc
    1151  aacaaagggg ctgtgtcctt cttcattttc gacaaggagt ggatgatgca
    1201  caacgcaaaa gttacaggaa ctgatggttt ttatgctaca gttcttagta
    1251  acactgagaa gggctacagt ggcgccccct actggaatgg gaaatctata
    1301  gtaggggttc ataaagggca cgtgtacgga gacgattcca agaattacaa
    1351  tcttatgtcg ccgattcccc ctgtcaaggg gttaacggcg cctaattttg
    1401  tgtatgagtc tccgtctctg caaggagatg tctttagcga cgccgacgtt
    1451  tcagacattg ctgattacgc cgaggaggtg tatgagaaaa cccttgcaga
    1501  gcctaaagtg tggaaacctg ccagcggtaa atactggtgg gaaatggctg
    1551  aagaggagg